Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27410 63 / 3e-11 B3 Domain of unknown function (DUF313) (.1) AT2G32645 59 / 3e-10 Domain of unknown function (DUF313) (.1) AT3G24850 55 / 3e-08 B3 Domain of unknown function (DUF313) (.1) AT5G24050 49 / 3e-06 B3 Domain of unknown function (DUF313) (.1) AT2G24670 47 / 9e-06 B3 Domain of unknown function (DUF313) (.1) AT1G05920 45 / 4e-05 B3 Domain of unknown function (DUF313) (.1) AT2G31420 43 / 9e-05 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030994 [exp] 421 / 8e-148 AT2G27410 60 / 4e-10 Domain of unknown function (DUF313) (.1) Lus10035393 [exp] 197 / 1e-62 AT2G27410 68 / 4e-14 Domain of unknown function (DUF313) (.1) Lus10035394 [exp] 195 / 6e-62 AT2G27410 61 / 1e-11 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 145 / 1e-40 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10038980 [exp] 143 / 1e-39 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 119 / 7e-32 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10027286 [exp] 96 / 3e-22 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10009354 [exp] 82 / 1e-18 AT2G31420 57 / 2e-10 Domain of unknown function (DUF313) (.1) Lus10027287 [exp] 69 / 7e-14 AT2G31420 47 / 1e-06 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014700 [exp] 66 / 6e-12 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1) Potri.015G014200 [exp] 65 / 1e-11 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1) Potri.013G065401 [exp] 57 / 1e-09 AT2G24670 51 / 5e-08 Domain of unknown function (DUF313) (.1) Potri.019G076500 [exp] 57 / 4e-09 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1) Potri.011G139000 [exp] 45 / 6e-05 AT2G32645 67 / 6e-13 Domain of unknown function (DUF313) (.1) Potri.013G031600 [exp] 44 / 0.0001 AT2G27410 59 / 2e-09 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF03754 [flax] [poplar] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Lus10030996 pacid=23166709 polypeptide=Lus10030996 locus=Lus10030996.g ID=Lus10030996.BGIv1.0 annot-version=v1.0 ATGACAATCGTTGGTGATCGACGCGTTGTCCGCCGCCGGTCTCGGAGAAGATGTGACGGCGGAATGTCCTACGGTTTGGATTTGCTGGCGGAAGCAGCTT TGTCCGTCGACCAATGCGGATGCGGCCGCAACTCCGCCGACCCTTTTCTTTGTTTCTTGACAGCCAAGAAACGTAAGGCTGCTTTCCGCCGACTCCATCT TTCCCTTTTTCTCACTCCTCAGGCTCCGAAGAAGAGGCGCATCGTTTTCCTTCCGCCACGACGACCGCCGTCACTTTCCGCTGCTTTTCCACCCACCGTT GACGACGACGCCTACGTCGACGGCGAAGCCTCTGCACCGTTCCCTTCGTCTTCGTTCACTCTAATTCCCTCCTCAGTCACACCCGCGGTCACAATTCCGG AGGAGTTTGCTCTAGAACGGCCTCCGACGCCATCATCCGCCGGCTTCCTCTGTTCCTCGACTTTCCCGGCGGCAGTCTCCTCCGCCGCTCGGCTGCAACA CCCACGCTTCAAGATTCTTCCACCTTCAATCATGGCTTCTCCTACTGCATTACCGGTGAATTTCGAGGCCGCTGAAGAGTTTCCCCAAATTTTGAAATTT AGGGTTTCCGCTATTGTCGGCGGCATTTTGGGAAACACATTTAATTTGGCGATTCGGAAGAAATTGACCAAGACTGATCTGAATTTCCAAAACCTCCGCC TGTCAATCCCGGAAAATCAAGTAGCCAACGACTTCCTCTCCGACGAAGAGAAGATGCAGTTCGATAAGGGGGAGAAGATCAAGTTGGGGGTTTTCTTGGA CCCAAGCATGGAATCCTTCTCCGGAGGTCAATTAACCAAGTGGAGGATGAAAAACTCGACGATTTACAATGTAATCGGAGTTTGGAGGCCCGTTTTGGTG AAGAGACAATGGAAGCGGTTGAGTCTGGAAGAAGGGGATGAGGTTGAGTTGTGGAGCTTCAGGAATGCTTCAGGGGAGCTCTGCTTTGTGATGATAGCGA TGACATTAGGATAA
AA sequence Show only first row Show all	>Lus10030996 pacid=23166709 polypeptide=Lus10030996 locus=Lus10030996.g ID=Lus10030996.BGIv1.0 annot-version=v1.0 MTIVGDRRVVRRRSRRRCDGGMSYGLDLLAEAALSVDQCGCGRNSADPFLCFLTAKKRKAAFRRLHLSLFLTPQAPKKRRIVFLPPRRPPSLSAAFPPTV DDDAYVDGEASAPFPSSSFTLIPSSVTPAVTIPEEFALERPPTPSSAGFLCSSTFPAAVSSAARLQHPRFKILPPSIMASPTALPVNFEAAEEFPQILKF RVSAIVGGILGNTFNLAIRKKLTKTDLNFQNLRLSIPENQVANDFLSDEEKMQFDKGEKIKLGVFLDPSMESFSGGQLTKWRMKNSTIYNVIGVWRPVLV KRQWKRLSLEEGDEVELWSFRNASGELCFVMIAMTLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27410	B3		Domain of unknown function (DU...		Lus10030996 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10006924 [exp]	17.5	0.5876
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10003933 [exp]	36.2	0.5970
					Lus10042671 [exp]	48.7	0.5514
AT1G35467		RALFL5	RALF-like 5 (.1)		Lus10006213 [exp]	88.5	0.4961
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10023990 [exp]	162.4	0.4903
AT5G46910			Transcription factor jumonji (...		Lus10030988 [exp]	183.3	0.5029

Compare expression of checked genes

Lus10030996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.