Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05070 332 / 6e-108 DHHC-type zinc finger family protein (.1) AT2G40990 298 / 5e-95 DHHC-type zinc finger family protein (.1) AT3G56920 291 / 4e-93 DHHC-type zinc finger family protein (.1) AT3G56930 284 / 2e-88 DHHC-type zinc finger family protein (.1.2) AT3G56950 258 / 5e-82 SIP2;1, SIP2 small and basic intrinsic protein 2;1 (.1.2) AT3G26935 209 / 1e-60 DHHC-type zinc finger family protein (.1) AT3G48760 193 / 2e-54 DHHC-type zinc finger family protein (.1) AT5G41060 181 / 8e-51 DHHC-type zinc finger family protein (.1.2) AT5G50020 180 / 3e-50 DHHC-type zinc finger family protein (.1.2) AT4G24630 179 / 4e-50 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035395 [exp] 1151 / 0 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1) Lus10038990 [exp] 485 / 1e-167 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1) Lus10027274 [exp] 483 / 8e-167 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1) Lus10027275 [exp] 319 / 3e-105 AT3G56950 249 / 2e-83 small and basic intrinsic protein 2;1 (.1.2) Lus10038989 [exp] 314 / 4e-103 AT3G56950 248 / 5e-83 small and basic intrinsic protein 2;1 (.1.2) Lus10012096 [exp] 278 / 1e-86 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 256 / 3e-75 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10035177 [exp] 215 / 1e-62 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 210 / 6e-61 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025200 [exp] 380 / 8e-127 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.006G027500 [exp] 377 / 1e-125 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.016G024900 [exp] 310 / 5e-102 AT3G56950 303 / 1e-104 small and basic intrinsic protein 2;1 (.1.2) Potri.006G027200 [exp] 286 / 2e-92 AT3G56950 264 / 1e-89 small and basic intrinsic protein 2;1 (.1.2) Potri.016G025100 [exp] 280 / 1e-86 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 268 / 2e-82 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.015G101900 [exp] 209 / 2e-60 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 207 / 8e-60 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 202 / 7e-58 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 201 / 9e-58 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10030997 pacid=23166866 polypeptide=Lus10030997 locus=Lus10030997.g ID=Lus10030997.BGIv1.0 annot-version=v1.0 ATGGCTCCAGCTGCTGGTGAAGCTGGGCCGTCGAAGGCTCGGCTTCTGGTGTCTGATTTCGCGATGGCGTTCATGTGGGTGAGCTCGGGCCCACTGGTGA GGATGTTCATGTACGAGGTTCTGGGCATGGGTTCCGGCGACCCTGTGTCAGAGATCGTAAAGTGTGGTTGCTCTATCACCAACATGTTCTTCTTCGCACT TCTGGGTAAACTCAACAAAGGCGGCAGTTACAACCCTCTCAATGTACTCTCCGATGGCATTTCTTCAGATTTCGCTCGTTTCCTTTACGTTTTTGGCGCC CGAATCCCTGCTCAGAAAGTTGATGTTGCTTTGCTTGATCGAGATGTTTGTGGCTCGAGGGTTTTTCATTGGTTTGGTTTGGCGGGTGGAATGTACTTGG ATCTATTTTCCGGGGTTAGGTTCATGATCAAAGCCTTCCCCGAAATAGGACTCGGTCCACGCCTGCAAGTGGAGATCCACCATGGCGCTCTAACGGAAGG GCTACTGACATTCGCTATCGTAACAATCTCTCTTGTGCTAGCAAGGAACATCCCTGGCAATTTCTTCATGAAAACTTGGATCTCAAGTGTCATGAAAGTC ACACTCCATATACTTGGCTCGGACATTACTGGCGGCTGTATGAACCCTGCCTCGGTGATGGGATGGGCCTATGCACGCGGGGATCACCTTACGAAGGAGC ACATATTTGTGTACTGGCTCGCCCCAGTTGGAGCTACTCTGCTAGCAGCGTGGATATTCAAACTGCTCGTACCGCCTTTGAATGAAATTGCAGAGAAACA GAAGCTGAAGAAGGTTTCACAATTCCTTCCACTAGCTAAACCACCACCACATTCCTCAATGGACCCTCCCAATCACAATACCTTCAGGCTTTATCAGCTT TGGAAGGGTAACAACAAATTCTTATGTGGTGGGAGATTAGTGTTCGGTCCAGATGCAGCATCGTTGTTCTTAACATCGTTCCTGATCGGAGGCCCAGGGA TTGCCTTCTGCATCAGAATGTTGTTGATGATTGGAAAGGATCCTGCTTTTAACTACCCGGTACTCATTGGTGGATGGGTTCTCCTCGTCATGGACTTTGC ATTTCTATTCATGACATCAAGTAGGGATCCAGGGATCATTCCGAGGAATGCACGGCGGCTTGAGATGGACGAGGCAATGACGACGTCGTCGATGGAGTGG ATCAACAACAGACTAAAAACCATGAAGCTTCCTCGGACAAAAGATGTGTTCCGGAACTACCCATTTTTCATATGCTTCATAACATCATCAACCATGTTAT GCTTGTACGTGTTCGTGTTCTCATGGATCAACATCATCCGACAAGAAGGAGCCGTGTGGAGTGTTCTAACCAATGACGTCATCTCCCTCAGCTTAATCAT TTACTGCTTCATAGCTGTTTGGTTCGTCGGAGGACTCACTGTTTTCCACTTCTACTTGATCTTTACCAACCAAACGACTTACGAGAACTTTCGATATCGA TACGATAAGAAGGACAACCCTTTCAGAAGAGGAGTGCTTCAGAACTTCAAGGAAGTGTTCGGGTCTGACATTCCTGCCTCGGCAGTGAACTTCAGGGAAT GGGTGGCACCTGAGATGATCGCTAACAACGATTCGGTGAGGAGTCGAGACATGAGTGGGAACACGTTCGGGGGATCCAGGGAGAGGTTCGATTTGGAAAT GGGAGGAGTAGGGGATCATCATAAGCTTGGGAAAGAACCAATTCCGGCCATTTTGCAGAGCTTGGATTACAATAGTTTTAATCACGGTGACCATGACCGC CTTGATGGTGATTTAAAGACGAAAGTAAATAGTTGTGATAGCATAATCATTCGAGATCAAGATCGGGATCTTACTAGCGATCGATATGGGTTATCAGACG ATCATCATAGTCCTCACCACAACTTAATGAATGAGGCCGCAACTCTCCAAGAACGACCAGTACATTAG
AA sequence Show only first row Show all	>Lus10030997 pacid=23166866 polypeptide=Lus10030997 locus=Lus10030997.g ID=Lus10030997.BGIv1.0 annot-version=v1.0 MAPAAGEAGPSKARLLVSDFAMAFMWVSSGPLVRMFMYEVLGMGSGDPVSEIVKCGCSITNMFFFALLGKLNKGGSYNPLNVLSDGISSDFARFLYVFGA RIPAQKVDVALLDRDVCGSRVFHWFGLAGGMYLDLFSGVRFMIKAFPEIGLGPRLQVEIHHGALTEGLLTFAIVTISLVLARNIPGNFFMKTWISSVMKV TLHILGSDITGGCMNPASVMGWAYARGDHLTKEHIFVYWLAPVGATLLAAWIFKLLVPPLNEIAEKQKLKKVSQFLPLAKPPPHSSMDPPNHNTFRLYQL WKGNNKFLCGGRLVFGPDAASLFLTSFLIGGPGIAFCIRMLLMIGKDPAFNYPVLIGGWVLLVMDFAFLFMTSSRDPGIIPRNARRLEMDEAMTTSSMEW INNRLKTMKLPRTKDVFRNYPFFICFITSSTMLCLYVFVFSWINIIRQEGAVWSVLTNDVISLSLIIYCFIAVWFVGGLTVFHFYLIFTNQTTYENFRYR YDKKDNPFRRGVLQNFKEVFGSDIPASAVNFREWVAPEMIANNDSVRSRDMSGNTFGGSRERFDLEMGGVGDHHKLGKEPIPAILQSLDYNSFNHGDHDR LDGDLKTKVNSCDSIIIRDQDRDLTSDRYGLSDDHHSPHHNLMNEAATLQERPVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56930			DHHC-type zinc finger family p...		Lus10030997 [exp]	0	1
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10036882 [exp]	9.0	0.7859
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10018936 [exp]	21.8	0.7816
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015287 [exp]	27.2	0.7807
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030837 [exp]	32.2	0.7235
AT2G37730			Protein of unknown function (D...		Lus10010869 [exp]	41.5	0.7557
AT5G61820			unknown protein		Lus10042158 [exp]	47.3	0.7254
AT1G61600			Protein of unknown function (D...		Lus10035372 [exp]	51.8	0.7472
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10030039 [exp]	56.0	0.7251
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035145 [exp]	57.7	0.7362
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	58.9	0.6464

Compare expression of checked genes

Lus10030997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.