Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61120 71 / 1e-13 unknown protein AT5G61090 63 / 1e-10 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G16680 61 / 4e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G02890 61 / 5e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G43770 45 / 6e-05 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035396 [exp] 599 / 0 AT5G61120 76 / 4e-15 unknown protein Lus10020350 [exp] 60 / 1e-09 AT3G02890 439 / 2e-131 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10009530 [exp] 60 / 2e-09 AT5G16680 395 / 5e-115 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028603 [exp] 50 / 2e-06 AT1G43770 106 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040100 [exp] 153 / 8e-42 AT5G61120 127 / 1e-31 unknown protein Potri.003G091000 [exp] 58 / 5e-09 AT3G02890 177 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.007G110400 [exp] 54 / 6e-08 AT1G43770 135 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.013G077900 [exp] 55 / 7e-08 AT5G16680 536 / 1e-165 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.019G041900 [exp] 54 / 1e-07 AT5G16680 288 / 6e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G189400 [exp] 53 / 2e-07 AT1G43770 142 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G173200 [exp] 41 / 0.0008 AT1G43770 187 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030998 pacid=23166721 polypeptide=Lus10030998 locus=Lus10030998.g ID=Lus10030998.BGIv1.0 annot-version=v1.0 ATGCAGGATCCTACAAGTTTGCCCTCCCGGCCCCAGAACAAAGTGGTGCTTGGAGAGCTAACCACAGCTGGTCTTTCTAGAAGCCGTTATCCCGTGAAAA GATATGTGAGGCCTAGCAAAGTGAAACCTTTAACTGAAGAGGAAGTGAAAAAATTAAGCTCAGGTGCTGAGATTGTTCGTACGTCGAAAACTACTATCAT CAGTAGACCTAGACAAATGTCCCTTAAACATCCCAATGTGCCTGTGAAAGTAAATCCAAGAATCCCTTCTGGTTTAGCAAAGTATGGCAGAGGCGGTGGT AGAAATATATACTTGAATTTCAGTCCTTCAGCAACCAAGAAATCAGAAGGTAGTACCAGTTGTGCTTCCTTGGCCTCTATGAATTTGGATGTTGAAGATA TAGCGACTCTTGTCCAAAAGCTTAGGTTTTATGAGTCTTATTTCCCTGCTAAGTGTGCTTCTTGGACGGGAAGGTGCAGGATTCTTGATCATGCTGGAGG AGGTAAATTTCAGCTATCAAGCAGGGTGCGCGAAGCCTATGGCCTTTCACTGGAGTTGCCAGTAGAACTTCAGGCTCATCCTGCAGCAGTGATAAATTGT AAAGCCTATGAGCTCTCTTTGAAGATGGCAGCGGAACATGAGGTTGAGTTGCTTCCACGTTCTGATATTTGGACACTCTTGTTCAATGATGATTCTCCTG ACTTGCGGGATATAGCATTGTACATTTTTGCAACTGCTGGCACAAAGAGCTCCGAAGATAACTATGCTAAGTTGCTTGAATGCATCGAAGCTGAGGATTT GGTGATCAGAACTGACGTTGATGGTTTTGAACTGCTGGTATTCTCATCGAAGCATCTACATACAGACATCCAAGGTGGACTTTGTTATCCTGATGTCATT TGTCACTGGAGCAGGAAACGGTTCTTCTGGGGGGTGTTTCAACAAGCTAAAGCTGTCATTCAGGTACTTCTGGAAAAACAAGGACCAGTTGCTGCCACCA CCGAGTTAGTGGCAAGCAGTTTGTAA
AA sequence Show only first row Show all	>Lus10030998 pacid=23166721 polypeptide=Lus10030998 locus=Lus10030998.g ID=Lus10030998.BGIv1.0 annot-version=v1.0 MQDPTSLPSRPQNKVVLGELTTAGLSRSRYPVKRYVRPSKVKPLTEEEVKKLSSGAEIVRTSKTTIISRPRQMSLKHPNVPVKVNPRIPSGLAKYGRGGG RNIYLNFSPSATKKSEGSTSCASLASMNLDVEDIATLVQKLRFYESYFPAKCASWTGRCRILDHAGGGKFQLSSRVREAYGLSLELPVELQAHPAAVINC KAYELSLKMAAEHEVELLPRSDIWTLLFNDDSPDLRDIALYIFATAGTKSSEDNYAKLLECIEAEDLVIRTDVDGFELLVFSSKHLHTDIQGGLCYPDVI CHWSRKRFFWGVFQQAKAVIQVLLEKQGPVAATTELVASSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61120			unknown protein		Lus10030998 [exp]	0	1
					Lus10024757 [exp]	4.7	0.8532
AT2G25700		ASK3	SKP1-like 3 (.1)		Lus10043288 [exp]	7.7	0.8548
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Lus10036905 [exp]	8.1	0.7685
AT1G75980			Single hybrid motif superfamil...		Lus10017287 [exp]	8.7	0.8351
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031871 [exp]	8.8	0.7899
					Lus10014474 [exp]	9.7	0.8138
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10021709 [exp]	13.9	0.7957
AT3G59250			F-box/RNI-like superfamily pro...		Lus10031018 [exp]	15.2	0.7447
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Lus10034387 [exp]	17.3	0.7713
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10041206 [exp]	17.5	0.7744

Compare expression of checked genes

Lus10030998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.