Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14368 1258 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 1232 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 981 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 976 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 748 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G12350 697 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 684 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G65920 548 / 3e-179 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 521 / 2e-169 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 170 / 1e-45 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027273 [exp] 1646 / 0 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10038991 [exp] 1643 / 0 AT4G14368 1265 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10018904 [exp] 1026 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 968 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 962 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 962 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10035397 [exp] 789 / 0 AT3G23270 526 / 2e-171 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036030 [exp] 773 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 725 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G167500 [exp] 1371 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.005G190000 [exp] 1035 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.002G070300 [exp] 1004 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.001G276900 [exp] 838 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 823 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 822 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 748 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 614 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 513 / 7e-165 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 491 / 8e-157 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10030999 pacid=23166821 polypeptide=Lus10030999 locus=Lus10030999.g ID=Lus10030999.BGIv1.0 annot-version=v1.0 ATGGCAGATTTTCCTACTTACATTCCCAATTCCGACCGCGACATCGACCAGGCGCTGATTACTCTGAAGAAAGGCACTCAGCTGATAAAATACAGCCGGA AAGGGAAACCTAAGTTCCGCGCCTTCAGACTCTCTCTGGACGAGACAGCATTGATTTGGTTATCTCGTGGACAGGAAAAGAATCTGAAGCTAGCTTCTGT GTCTCGGATCCTTCCCGGTCAGAGAACTGCTGTGTTTAGGAGGTACTTGCGTCCTGAAAAAGATTGTCTCTCGTTTTCCTTAATTTACAACAATGGTGAT AGATCTCTTGATTTGATCTGCAAAGATAAAGTTGAGGCAGAAGTTTGGCTTGCAGGCCTTAAGGCCATCGTTGGAAGAAATCGCGGCAGGCGCACCAGAA GTGATATCTCAGATCTGACTGAAGGTGGAGATTACTTTGGTAGTTCACCAAGCCTTGCTCGTGGGAGAATTTCTATCGATTTAGCTTGCCCAGATGGTGG CTCAGAATATGCAAACATGCAACTAAGACCGAGTTCTGTTGATGGTGGGTTCCGGATTAGTGTTTCGAGTGGCGTCTCAAATACCTCATCTGGTCCGGAT GATATCGAATCATTAGGGGATGTTTATATGTGGGGAGAGGTGTGGAGCGATGGCTTCGCACATGAAGGACCCGCTGTTTCTCCTTCGACACGAATCGATG TCTTGGCTCCTAAACCACTAGAGTCCAATGTAGTTCTTGACGTTCATCAGATTGCTTGTGGGGAGCGACATGTTGCTCTTGTTACAAGGCAAGGCGAGAT TTTCACGTGGGGAGAGGAATGTGGAGGGAGACTTGGACATGGAGTCAAGAAAGATTTCAGCCGTCCTCGACTTGTTGAGGTTCTCGCGGTTACTAATGTC GAATTTGTGGCGTGTGGCGAGCATCACACATGTGCTGTAGCGTCGTCAGGTGACTTATTTACGTGGGGTGATGGCAGTCATAATGCTGGACTTCTTGGTC ATGGTAGTGATGTTAGCCACTGGATACCCAAAAGGGTGTCCGGTGCTTTAGAAGGACTTCAGGTTCTAACTATTGCTTGTGGCTCGTGGCATTCAGCTCT AGCAACTTCAAGTGGCAAACTGTTCACTTTTGGAGATGGGGCCTTTGGCGTTCTTGGCCATGGGGACCAAGAAACTGTTTCTTATCCGAAAGAAGTTCAG CTGTTAAGTGGATTAAGGACCATGAAAGTTGCTTGTGGTGTATGGCACACAGCAGCTATAGTGGAGGTTATGGGACAGCCCGGTGCAGCCATGTCATCTA GAAAGCTGTTCACTTGGGGCGACGGTGACAAGTATCGTTTGGGCCATGGAAACAAGGAGATGTATCTTCTTCCTACCTGTGTTTCTTCCCTTATTGACTA CAATTTCCACCAGTTAGGTTGTGGACATACTATGACAATTGCTCTTACCACCTCAGGCCATGTGTTTACAGTGGGAAGCACTTCATATGGCCAACTAGGC AATCCAAGCTCTGATGGAAAGACACCTGTTTTAGTTCAAGATAGATTGGTTGGTGAATTCGTTGAAGAAATTTCGTGTGGGGACTTCCATGTTGCGGTTC TTACATCGAGAAGCGAAGTATTCACTTGGGGTAAGGGTGCCAATGGGAGATTAGGACAGGGAGACACGGAGGATAGAAAATCTCCAACACTAGTGGAAGC ACTCAAGGACAAGCATGTCAAAAGCATATCATGCGGATCAAATTTCACGTCCAGCATATGCATCCATAAATGGATTTCAGGAGCTGACCAGTCGGTTTGT TCGGGTTGTCGGCAAGCATTCGGTTTTACTAGGAAGCGGCACAATTGCTACCACTGCGGATTGGTTCATTGCCATTCTTGCAGCTCCAAGAAGGCAATGA GAGCTGCCTTAGCCCCAACACCTGGGAAACCACATCGAGTCTGCGATGCTTGTTATGCCAAGCTCAAAGCTGGTGAGTCTGGTAACTCTAATATGAACAG GAAACATACAACAAATCCGCGCCGGTCAGTGGACATGAGTTCGAGAATGGATTTCCCTTTCCGGCCCTCTAGAGTTTTGTTGTCTCCTACTACTGAGCCT GTAAAGTACCTGGAGGTCAAACATGGAAAGCCTGGGATGAGATGTGACGATTCCTCCATAGTAAGAGCCTCCCAAGTTCCCGAACTTACGCTACTAAAAG ACGTAGCGTTTCCAAGTTCACTAAGTGCCATGCAAACTTCGTTGAAGCCTAATCCGGTTTCGACATATCAGCCATTGCCACAGCCTATGATCTCAGCTCA TCCAGCCAGCAACTCTAGACCTTCTTCACCGTACAGAAGACCGAGCCCTCCTCGATCTGTAGGTGGTGGGGTCTCGAGGAGTGTCATTGACAGCTTGAGG AAAACGAACGATATCATGAAGCAAGACATGGCAAAGCTGCAAAATCAAATCAAAACGTTAAAGCAAAAATGTGACACTCAAGACAAGGAGATACATCAGC TGCAACAAGAAGCTAAAGAAGTTGCTTCATTTGCCTCAACGGAGTCTTCTAAGCTTCAGGTTGCTATGGAAGTTGTGACATCCATTACAGACCAGCTAAA GGAAGTAAAAAACCAGCTGCCTCCTGATGTACAAGATGCTGAGACGCTGAATGTCATTAACAATCAAATAGAAGCTTTCCTGAATGAAAACAAACCATCG AAATTGCCGTCAAGCTTGGTGCAAAAAGGACCAGCTGAGGCATCGTCAGAACCCAAGAAAGACGAATCACGTAATGCTGCAGCAGAGGCATTAACCAACG AACACAATCCTGAAAGCGACACCAAAATAAAGCTGGAGACATCGACTTCGAAAAAGGACTCGCAGAGAGAAAGCATCGAACAGTTTGAGCCAGGAGTGTA CGTAACTTTTGTACAGCATCCAAGTGGAACGAAGATCTTCAAACGAGTCAGATTCAGCAAGAGGAAGTTTCAGGAGCAGCAGGCAGAGGTGTGGTGGAAG GAGAACAAAGAGAGGCTTCTTAAGAGATACGTTCCTGCGAAATGA
AA sequence Show only first row Show all	>Lus10030999 pacid=23166821 polypeptide=Lus10030999 locus=Lus10030999.g ID=Lus10030999.BGIv1.0 annot-version=v1.0 MADFPTYIPNSDRDIDQALITLKKGTQLIKYSRKGKPKFRAFRLSLDETALIWLSRGQEKNLKLASVSRILPGQRTAVFRRYLRPEKDCLSFSLIYNNGD RSLDLICKDKVEAEVWLAGLKAIVGRNRGRRTRSDISDLTEGGDYFGSSPSLARGRISIDLACPDGGSEYANMQLRPSSVDGGFRISVSSGVSNTSSGPD DIESLGDVYMWGEVWSDGFAHEGPAVSPSTRIDVLAPKPLESNVVLDVHQIACGERHVALVTRQGEIFTWGEECGGRLGHGVKKDFSRPRLVEVLAVTNV EFVACGEHHTCAVASSGDLFTWGDGSHNAGLLGHGSDVSHWIPKRVSGALEGLQVLTIACGSWHSALATSSGKLFTFGDGAFGVLGHGDQETVSYPKEVQ LLSGLRTMKVACGVWHTAAIVEVMGQPGAAMSSRKLFTWGDGDKYRLGHGNKEMYLLPTCVSSLIDYNFHQLGCGHTMTIALTTSGHVFTVGSTSYGQLG NPSSDGKTPVLVQDRLVGEFVEEISCGDFHVAVLTSRSEVFTWGKGANGRLGQGDTEDRKSPTLVEALKDKHVKSISCGSNFTSSICIHKWISGADQSVC SGCRQAFGFTRKRHNCYHCGLVHCHSCSSKKAMRAALAPTPGKPHRVCDACYAKLKAGESGNSNMNRKHTTNPRRSVDMSSRMDFPFRPSRVLLSPTTEP VKYLEVKHGKPGMRCDDSSIVRASQVPELTLLKDVAFPSSLSAMQTSLKPNPVSTYQPLPQPMISAHPASNSRPSSPYRRPSPPRSVGGGVSRSVIDSLR KTNDIMKQDMAKLQNQIKTLKQKCDTQDKEIHQLQQEAKEVASFASTESSKLQVAMEVVTSITDQLKEVKNQLPPDVQDAETLNVINNQIEAFLNENKPS KLPSSLVQKGPAEASSEPKKDESRNAAAEALTNEHNPESDTKIKLETSTSKKDSQRESIEQFEPGVYVTFVQHPSGTKIFKRVRFSKRKFQEQQAEVWWK ENKERLLKRYVPAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14368			Regulator of chromosome conden...		Lus10030999 [exp]	0	1
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	5.7	0.9305
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10024879 [exp]	5.7	0.9268
AT4G02110			transcription coactivators (.1...		Lus10010017 [exp]	7.3	0.9304
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10003954 [exp]	9.2	0.9257
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10008729 [exp]	9.5	0.9299
AT3G56370			Leucine-rich repeat protein ki...		Lus10025139 [exp]	15.4	0.9017
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	16.6	0.9217
AT3G42660			transducin family protein / WD...		Lus10021720 [exp]	19.3	0.9205
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10031090 [exp]	20.4	0.8568
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10001356 [exp]	21.7	0.8780

Compare expression of checked genes

Lus10030999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.