Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56940 667 / 0 CRD1, CHL27, ACSF, AT103 COPPER RESPONSE DEFECT 1, dicarboxylate diiron protein, putative (Crd1) (.1), dicarboxylate diiron protein, putative (Crd1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035398 [exp] 768 / 0 AT3G56940 679 / 0.0 COPPER RESPONSE DEFECT 1, dicarboxylate diiron protein, putative (Crd1) (.1), dicarboxylate diiron protein, putative (Crd1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G027300 [exp] 703 / 0 AT3G56940 700 / 0.0 COPPER RESPONSE DEFECT 1, dicarboxylate diiron protein, putative (Crd1) (.1), dicarboxylate diiron protein, putative (Crd1) (.2) Potri.016G025000 [exp] 660 / 0 AT3G56940 670 / 0.0 COPPER RESPONSE DEFECT 1, dicarboxylate diiron protein, putative (Crd1) (.1), dicarboxylate diiron protein, putative (Crd1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF02915 [flax] [poplar] Rubrerythrin Rubrerythrin
Representative CDS sequence Show only first row Show all	>Lus10031000 pacid=23166861 polypeptide=Lus10031000 locus=Lus10031000.g ID=Lus10031000.BGIv1.0 annot-version=v1.0 ATGGCGGCAGAAATGGCTCTATCGAAACCAGTCATCTCCTCCAAGTTCACCAAAACATCCCAATTCACCACCCAAAGAAGAAGCTTCAACTCTTCCTCAT CCTTCCGCTCCATCAAAATGTCTGCTGCCACTTCTCCGACCACCGGGAAGAAGAAGATTCAGAAGACGGCAATCAAGGAGACGCTGCTGACTCCGAGGTT CTACACTACGGACTTCGACGAGATGGAGACTCTGTTCAACCAGGAGATCAACAAGAAGCTGAACCAGGAGGAGTTCGTTGCGCTGCTGCAGGAGTTCAAG ACTGACTACAATCAGACCCACTTCGTCAGGAACAAGGAGTTCAAGGAAGCCGCTGACAAGATGCAAGGTCCTCTCCGCCAGATCTTCGTCGAGTTTCTTG AGCGGTCCTGTACTGCTGAGTTCTCCGGCTTCCTTCTCTACAAAGAGCTCGGTAGGAGGCTCAAGAAAACAAATCCTGTTGTGGCAGAGATATTCTCACT GATGTCAAGGGATGAAGCCAGGCATGCAGGGTTCCTGAACAAGGGACTATCAGATTTCAACCTGGCATTGGACCTGGGTTTCCTGACAAAGGCGAGGAAG TACACCTTCTTCAAGCCCAAGTTCATCTTCTACGCTACTTACCTGTCCGAGAAGATCGGGTACTGGAGGTACATCACCATCTACAGGCATCTCAAGGCCA ACCCTGAGTACCAGTGCTACCCGATCTTCAAGTACTTTGAGAACTGGTGCCAGGACGAGAACCGCCACGGAGATTTCTTCTCTGCATTGATGAAGGCCCA GCCCCAGTTCCTCAACGACTGGAAGGCCAAGCTCTGGGCTCGCTTCTTCTGTCTCTCCGTGTATGTCACAATGTACCTAAATGACTGTCAAAGATCAGCC TTCTATGAAGGCATTGGACTCGACACAAAAGAGTTCGACATGCATGTCATCATTGAGACGAATCGGACAACTGCGAGGATATTCCCAGCGGTGCTGGATG TGGAGAACCCAGAGTTCAAGAGGAAGCTGGACAGGATGGTGGTCATAAACCAGAAGCTGCTTGCTGTAGGAGAGACCGATGACATTCCATTGGTGAAGAA CTTGAAGAGAATACCCATCATTGCAGCACTTGTGTCTGAGCTCATATCCGCCTACCTAATGAAACCCATAGAGTCTGGATCGGTGGATTTCGCTGAATTC GAGCCTAAGCTTGTTTATTAA
AA sequence Show only first row Show all	>Lus10031000 pacid=23166861 polypeptide=Lus10031000 locus=Lus10031000.g ID=Lus10031000.BGIv1.0 annot-version=v1.0 MAAEMALSKPVISSKFTKTSQFTTQRRSFNSSSSFRSIKMSAATSPTTGKKKIQKTAIKETLLTPRFYTTDFDEMETLFNQEINKKLNQEEFVALLQEFK TDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARK YTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRSA FYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVINQKLLAVGETDDIPLVKNLKRIPIIAALVSELISAYLMKPIESGSVDFAEF EPKLVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10031000 [exp]	0	1
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10035398 [exp]	1.0	0.9749
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10037875 [exp]	1.4	0.9639
AT1G26761			Arabinanase/levansucrase/inver...		Lus10036775 [exp]	2.8	0.9325
AT5G21222			protein kinase family protein ...		Lus10023650 [exp]	4.2	0.9412
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10018579 [exp]	4.9	0.9573
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	6.3	0.9417
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	6.6	0.9492
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10008594 [exp]	7.1	0.9235
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10039810 [exp]	11.5	0.9368
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10000959 [exp]	11.6	0.9300

Compare expression of checked genes

Lus10031000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.