Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10250 359 / 2e-124 Plant protein 1589 of unknown function (.1.2) AT5G04090 298 / 2e-100 Plant protein 1589 of unknown function (.1.2) AT3G61700 134 / 2e-36 Plant protein 1589 of unknown function (.1.2) AT2G46420 128 / 3e-34 Plant protein 1589 of unknown function (.1.2) AT3G55240 64 / 7e-13 Plant protein 1589 of unknown function (.1) AT2G29605 64 / 3e-11 Plant protein 1589 of unknown function (.1) AT3G28990 58 / 1e-10 Plant protein 1589 of unknown function (.1) AT1G10657 57 / 3e-10 Plant protein 1589 of unknown function (.1.2.3.4) AT5G02580 55 / 1e-09 Plant protein 1589 of unknown function (.1.2) AT1G49700 58 / 2e-09 Plant protein 1589 of unknown function (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035397 [exp] 556 / 0 AT3G23270 526 / 2e-171 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10004016 [exp] 132 / 1e-36 AT3G61700 253 / 3e-83 Plant protein 1589 of unknown function (.1.2) Lus10019011 [exp] 134 / 2e-36 AT3G61700 212 / 4e-66 Plant protein 1589 of unknown function (.1.2) Lus10030264 [exp] 134 / 4e-36 AT2G46420 346 / 4e-117 Plant protein 1589 of unknown function (.1.2) Lus10039340 [exp] 130 / 4e-35 AT3G61700 182 / 6e-55 Plant protein 1589 of unknown function (.1.2) Lus10025300 [exp] 52 / 1e-08 AT5G02580 115 / 5e-35 Plant protein 1589 of unknown function (.1.2) Lus10024432 [exp] 52 / 3e-08 AT5G02580 112 / 1e-33 Plant protein 1589 of unknown function (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G041200 [exp] 402 / 2e-141 AT3G10250 396 / 4e-139 Plant protein 1589 of unknown function (.1.2) Potri.016G038100 [exp] 396 / 5e-139 AT3G10250 381 / 5e-133 Plant protein 1589 of unknown function (.1.2) Potri.014G097800 [exp] 138 / 7e-38 AT2G46420 503 / 5e-180 Plant protein 1589 of unknown function (.1.2) Potri.002G169900 [exp] 135 / 6e-37 AT2G46420 500 / 1e-178 Plant protein 1589 of unknown function (.1.2) Potri.015G019500 [exp] 118 / 1e-30 AT3G61700 161 / 1e-46 Plant protein 1589 of unknown function (.1.2) Potri.012G001700 [exp] 106 / 2e-26 AT2G46420 165 / 3e-48 Plant protein 1589 of unknown function (.1.2) Potri.015G014550 [exp] 91 / 3e-20 AT3G10250 92 / 2e-20 Plant protein 1589 of unknown function (.1.2) Potri.012G001900 [exp] 74 / 8e-15 AT3G61700 82 / 2e-17 Plant protein 1589 of unknown function (.1.2) Potri.010G042300 [exp] 66 / 1e-13 AT1G10657 119 / 1e-36 Plant protein 1589 of unknown function (.1.2.3.4) Potri.008G189100 [exp] 66 / 1e-13 AT1G10657 122 / 8e-38 Plant protein 1589 of unknown function (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09713 [flax] [poplar] A_thal_3526 Plant protein 1589 of unknown function (A_thal_3526)
Representative CDS sequence Show only first row Show all	>Lus10031001 pacid=23166779 polypeptide=Lus10031001 locus=Lus10031001.g ID=Lus10031001.BGIv1.0 annot-version=v1.0 ATGTCGAATGCACCAGTGAGAAGGGTCTCACCCAAAGACATACAAGTCGTTCAAAATCTCATAGAACGGTGTCTCCAATTGTACATGAATCAACAAGAAG TTGTCGAAACATTATTGGCCCAAGCAAAGATAGAGCCTGGTTTTACAGAACTTGTTTGGCAAAAGCTCGAAGAAGAAAATCGTGACTTCTTTAAAGCTTA TTATCTGAGGTTGGTAGTGAAGCACCAAATAATGGAATTTAACAAGCTGCTTGAGCAACAGGCGCAGTTGATGCACCAGATAAATCCAACTGGAGTTGCG TCAATGACTACTCCTAATGGGGCTCAGCTTCCACCACTGCCGCAGAATTCCTCATGCTATGTCTCCGAACAGGCACATGGAGCCTTGAGATCAGATAACA TGCATGGGTCCATTGGTCCTGGCGTTCCTAATGCATTCAGCAACGGTGGATCCCCACTCCATCCTAGTATGCGAACTGCTCTTGACATTTCAGCTCATGC AAATAGAATTGATTCGACGGTAAACATGCTTGCAACTCAACGTTCGAACTTGGCTGTGATGCAAGGAATGAATGGAGCTATAAAATCTGAAGCTGGTTAC ACTGGCACTACGTCATATGTGGTGGGCACTGGTGGAAATGTTATAGAAGCACGTCCATCCATTGCAGATGCATCTGTTGCATCATTTAGCAGTGTAGGAT CCAGCTCCCAAGCCATTAATGAGCCACTTCTTGATGCAGACATATCTTCTTTTGGCTTTTTGGGACAGATACCTCGGAATTTCAGTCTTTCAGATTTGAC AGCAGATTTCAATCAGAGCTCAGATATACTTGAAAACTATGCTAGATCACCCTTCTTGCCTCAGGAAAATGATAGTTTTTTGGATTCCCGTGAAAGAGAG CATCAAGGAGACAGCCGGTTGGATACCATATCAGAAGGAGTGAGTTATGACAATTTCGGAAGTGAATAG
AA sequence Show only first row Show all	>Lus10031001 pacid=23166779 polypeptide=Lus10031001 locus=Lus10031001.g ID=Lus10031001.BGIv1.0 annot-version=v1.0 MSNAPVRRVSPKDIQVVQNLIERCLQLYMNQQEVVETLLAQAKIEPGFTELVWQKLEEENRDFFKAYYLRLVVKHQIMEFNKLLEQQAQLMHQINPTGVA SMTTPNGAQLPPLPQNSSCYVSEQAHGALRSDNMHGSIGPGVPNAFSNGGSPLHPSMRTALDISAHANRIDSTVNMLATQRSNLAVMQGMNGAIKSEAGY TGTTSYVVGTGGNVIEARPSIADASVASFSSVGSSSQAINEPLLDADISSFGFLGQIPRNFSLSDLTADFNQSSDILENYARSPFLPQENDSFLDSRERE HQGDSRLDTISEGVSYDNFGSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10250			Plant protein 1589 of unknown ...		Lus10031001 [exp]	0	1
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	2.0	0.9710
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Lus10027423 [exp]	2.0	0.9522
AT3G27870			ATPase E1-E2 type family prote...		Lus10022238 [exp]	4.7	0.9428
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10025841 [exp]	5.1	0.9347
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10041845 [exp]	6.3	0.9429
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	7.1	0.9599
AT3G23270			Regulator of chromosome conden...		Lus10035397 [exp]	14.3	0.9151
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	14.5	0.9472
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	14.9	0.9524
AT5G11310			Pentatricopeptide repeat (PPR)...		Lus10013139 [exp]	16.1	0.8934

Compare expression of checked genes

Lus10031001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.