Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45940 94 / 3e-19 Glycosyl hydrolases family 31 protein (.1) AT5G11720 76 / 1e-13 Glycosyl hydrolases family 31 protein (.1) AT5G63840 76 / 1e-13 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) AT1G68560 73 / 6e-13 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) AT3G23640 64 / 6e-10 HGL1 heteroglycan glucosidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035399 [exp] 174 / 1e-50 ND 44 / 8e-06 Lus10008067 [exp] 85 / 2e-16 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10035020 [exp] 82 / 2e-15 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10033490 [exp] 81 / 3e-15 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10041457 [exp] 80 / 7e-15 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10034315 [exp] 78 / 2e-14 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035019 [exp] 78 / 2e-14 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10038408 [exp] 77 / 4e-14 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10020887 [exp] 70 / 5e-12 AT5G63840 1435 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G039500 [exp] 1119 / 0 AT5G63840 74 / 3e-13 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.011G154300 [exp] 91 / 2e-18 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.005G069000 [exp] 78 / 2e-14 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 77 / 3e-14 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 76 / 9e-14 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.010G125800 [exp] 76 / 9e-14 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.008G120000 [exp] 76 / 1e-13 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.007G100000 [exp] 75 / 2e-13 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.001G129600 [exp] 74 / 4e-13 AT3G23640 1463 / 0.0 heteroglycan glucosidase 1 (.1.2) Potri.011G154200 [exp] 73 / 6e-13 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01055 [flax] [poplar] Glyco_hydro_31 Glycosyl hydrolases family 31
Representative CDS sequence Show only first row Show all	>Lus10031003 pacid=23166710 polypeptide=Lus10031003 locus=Lus10031003.g ID=Lus10031003.BGIv1.0 annot-version=v1.0 ATGGAACCGCCGCCGCCGATTACCGCTAAGATAACCAAGAAGCACCACAAACATCTAAACAACCCATTCCCTTCCCCACCAAAATCTCTTCCATTTCTCC AAGGCGGCCTCTCCTTCAGTCAGTTACCTACCACACCATCTCCGACCGCTTTCCCGGTCGGACCCGATTTCCAGCTCCACTGGATCCACCAAAACGGCGG CTCCTTATCGATCACCCGTAAATCCCGCCCCGATAGATCCCTGTGGCGTACAGTTCCGGGGCAGGCTTTCGTATCCGCCGCAATGGTGGAGACGGAGGTG GAGGAAAGCAGAGGATCCTTCTCTGTGAAAGACGGAACCGTTCACTTGGTCTGCGAGCATCAGACGGTGGACGAGATTCGGGTCGTCGTCTTGTCGGAGA CGGGGCCGCCGTCCTCTGTGGTGGTCATGGGTCGACTGCACAGCAGGAAGCGGAAAAACGAACCGGTCTACTCGGCGAGGTACTCGGTCCGGTTTAGCCA GAAGGGAGCGGACGAAGTCGGGTTCGAAATCAGGGTCGGGTCGGCGACCCAAATTCAACATGAGGAGATGAGGAGAAGAATGAAGGCGACGAGTTTCAGG AGTCATCAGGAGAAGAAGAAGAAGAAGATAAAGAGAAAGAAGAATAAGAAGGGGTTCGGGTCTTTGTTGCGATCTTGCTTCTGGAATCCGAGAGGGTTCG CGGCGGTTGTTTCGTCGGGGAAAGATCGGGAAATTTCGCCGGTGAGGGAATTCAACAGGGTGATCGTGACGTATTCGAGCGATGTAGATGAGAGCTTTTA TGGGTTCGGTGAGCAGTTCTCTCACATGGATTTGAAAGGGAAAAGGGTCCCCATTTTTGTTCAGGAACAGGGGATTGGGAGAGGCGATCAGCCCATTACT TTTGCAGCCAATTTGGTCAGCTACAGAGCTGGGGGAGATTGGAGCACAACATATGCACCATCACCGTTCTACATAACATCAAACATGAGATCCCTCTACC TAGAAGGCTACAACTACTCTGTTTTCGATCTCACACGCCACGACAGAGTTCAAATCCAGATGCACGGAAATTCCATCTCAGGAACAATACTCCACGGCGA AACACCCACCGAGCTCATCGAGCGATTCACGGCCACAATCGGACGGCCTCCGATGCTACCCAAGTGGGTGATCTCGGGGGCGGTGGTGGGGATGCAAGGA GGGACTGAAACTGTTAGGGAAGTTTGGGACAAATTGGAAGGGTACGAAGTTCCCGTATCTGCATTTTGGTTGCAGGATTGGGTTGGGCAGAGGGAGACGG TGATTGGGTCGCAGCTGTGGTGGAATTGGGAAGTTGACGGTGATCGGTATAATGGGTGGAAAGAATTGATCGGAGATCTTGGTGATCGGAATGTTAGAGT GATGACTTACTGCAACCCATGTTTGGCCCCGACAGATGGGAAGGCAAACAGGAGAAGGAACCATTTCGAGGAGGCAAAGAAGTTGGATATATTGGTGAAG GACAAAGATGGAGAGCCTTACATGGTTCCAAACACAGCCTTCAGTGTTGGGATGCTGGACTTCACTCACCCGAACTCGGGGCCATGGTTCAAGCAAGTGT TGAAGGAAATGGTGGATGATGGAGTCCGAGGCTGGATGGCCGATTTCGGCGAAGGCCTTCCCGTCGATGCATCTCTCTTTTCGGGGGAATGCCCTATCCA GGCACACAACAGATACCCAGAGCTATGGGCACAGGTGAACAGAGAATTCGTCGAAGAATGGAAGGCAGAAAATCATCGCAAAAGTAGTATTACAATTAGT ACAGAAGAAGAAGAAGATGATGATGATGATGATGATGAATCTTCGTTGGTGTTCTTCATGCGGGCAGGCTTTAGGAACAGTCCCAAATGGGGGATGCTGT TCTGGGAAGGCGACCAGATGGTAAGCTGGCAGAGGAACGACGGCATCAAAAGCGCCGTCGTCGGCCTTCTCAGCGGGGGAATCTCCGGCTACGCTCTCAA CCACAGCGACATCGGCGGCTACTGCTGCGTCGATTTGCCCTTCATGGCTAAGTACCGCCGCAGCGAGGAGCTTCTTATGCGGTGGATGGAGCTCAGTGCC TTCACCGCCGTTTTCCGTACGCATGAGGGGAACAAACCATCGAGCAACGCCCAATTCTACAGCAACCACAACACTCTCTCGCAGTTCGCCCGCTGCGCCA AACTGTACAAGTCCTGGTACTTCTACCGACTTCAACTCGTAAAGGAAGCGTCGGAGAAAGGGCTGCCGATATGCAGGCACATGTTCCTCCACTATCCGAG CGACAGGAATGTGGGGAAGCTTAGCTACGAGCAGTTCCTGGTGGGAACAGAGATCCTGGTGGTGCCTGTTTTGGATAAAGGGAAACAGGAAGTGAAGGCT TATTTCCCAAAGGCCGATCAACGTTTTTCGACATCCTCTTCTTGGTTGCATGTTTGGTCTGGGAAAGTGTATGATGAAGTGGGCTGTGATGCTTTGGTTG AAGCTCCAATTGGTTACCCTGCTGTGTTTGTTAAAGCTGGGTCGCCTGTTGGGGAGACGTTTCTTAATAATCTCACAAGTTTTGGGATTTTGTAG
AA sequence Show only first row Show all	>Lus10031003 pacid=23166710 polypeptide=Lus10031003 locus=Lus10031003.g ID=Lus10031003.BGIv1.0 annot-version=v1.0 MEPPPPITAKITKKHHKHLNNPFPSPPKSLPFLQGGLSFSQLPTTPSPTAFPVGPDFQLHWIHQNGGSLSITRKSRPDRSLWRTVPGQAFVSAAMVETEV EESRGSFSVKDGTVHLVCEHQTVDEIRVVVLSETGPPSSVVVMGRLHSRKRKNEPVYSARYSVRFSQKGADEVGFEIRVGSATQIQHEEMRRRMKATSFR SHQEKKKKKIKRKKNKKGFGSLLRSCFWNPRGFAAVVSSGKDREISPVREFNRVIVTYSSDVDESFYGFGEQFSHMDLKGKRVPIFVQEQGIGRGDQPIT FAANLVSYRAGGDWSTTYAPSPFYITSNMRSLYLEGYNYSVFDLTRHDRVQIQMHGNSISGTILHGETPTELIERFTATIGRPPMLPKWVISGAVVGMQG GTETVREVWDKLEGYEVPVSAFWLQDWVGQRETVIGSQLWWNWEVDGDRYNGWKELIGDLGDRNVRVMTYCNPCLAPTDGKANRRRNHFEEAKKLDILVK DKDGEPYMVPNTAFSVGMLDFTHPNSGPWFKQVLKEMVDDGVRGWMADFGEGLPVDASLFSGECPIQAHNRYPELWAQVNREFVEEWKAENHRKSSITIS TEEEEDDDDDDDESSLVFFMRAGFRNSPKWGMLFWEGDQMVSWQRNDGIKSAVVGLLSGGISGYALNHSDIGGYCCVDLPFMAKYRRSEELLMRWMELSA FTAVFRTHEGNKPSSNAQFYSNHNTLSQFARCAKLYKSWYFYRLQLVKEASEKGLPICRHMFLHYPSDRNVGKLSYEQFLVGTEILVVPVLDKGKQEVKA YFPKADQRFSTSSSWLHVWSGKVYDEVGCDALVEAPIGYPAVFVKAGSPVGETFLNNLTSFGIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10031003 [exp]	0	1
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10027807 [exp]	2.0	0.7530
AT5G07470		PMSR3, ATMSRA3	ARABIDOPSIS THALIANA METHIONIN...		Lus10013673 [exp]	4.0	0.7915
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033209 [exp]	10.6	0.7128
					Lus10019586 [exp]	11.5	0.6389
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	12.0	0.7044
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	14.5	0.7273
AT5G03795			Exostosin family protein (.1)		Lus10039142 [exp]	17.3	0.6771
AT5G46230			Protein of unknown function, D...		Lus10033612 [exp]	23.1	0.7085
					Lus10004306 [exp]	23.2	0.6166
AT2G31820			Ankyrin repeat family protein ...		Lus10008329 [exp]	26.0	0.6450

Compare expression of checked genes

Lus10031003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.