Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80270 516 / 2e-177 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) AT1G15480 484 / 5e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15590 410 / 4e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 166 / 1e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 162 / 2e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G02820 162 / 3e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G07590 155 / 2e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 146 / 1e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 131 / 2e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 130 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010430 [exp] 683 / 0 AT1G80270 651 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10012112 [exp] 673 / 0 AT1G80270 659 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10042574 [exp] 172 / 1e-46 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042757 [exp] 171 / 3e-46 AT1G07590 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029724 [exp] 167 / 1e-44 AT1G07590 691 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022033 [exp] 155 / 2e-41 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013047 [exp] 149 / 2e-38 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 146 / 1e-37 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033698 [exp] 145 / 3e-37 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G039600 [exp] 615 / 0 AT1G80270 654 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.016G036100 [exp] 594 / 0 AT1G80270 634 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.003G193600 [exp] 435 / 9e-146 AT1G80270 442 / 9e-149 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.009G030900 [exp] 169 / 2e-45 AT1G07590 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 164 / 8e-44 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 160 / 1e-42 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 157 / 2e-41 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G132700 [exp] 156 / 3e-41 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 148 / 1e-38 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G120900 [exp] 145 / 2e-37 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031004 pacid=23166836 polypeptide=Lus10031004 locus=Lus10031004.g ID=Lus10031004.BGIv1.0 annot-version=v1.0 ATGTGGGCTCTCCGACGAACTCCGTGTTCTGTCAAGTCCCAAGGGGTGAAATTAGGAACATCTCGAGCTGCCGGATTTGTAAAACTGTTTGATCAAGTAT ATTTGAACTCAAACTTTCTAGGGACTTCCCATGTAGCATCATCGTATAGCAGTTGTTCTTGTTATCTGCTTCAGCGTCCTTCCACTGTGTCATTAAAGGT TTTCACAACTGGTATGGGTCGGGAATTTTCTTCACGAGCTGGAAAAGTCGTGACTAGTTTATCCAAAGATGATGATGATGATGATCCGTTTTCTGAGCTT CAAGGTCCCGTTTCTACCTCTGGGGAAGAAAATGAAGATAATGATGATAATGAAGAATCTTCTAAGTATGTGTTGGGATTTTCAGATACCGAAACAGACC CTAGTGAGAAACTGATGACAGCGAAAACATTCTCCAACAACAAACTGTTGAATGCCATACTTTCGAGCTCATTTTTGCCCGTCGAAGCTGTTATGAATAG TTGGGTGCAAGAAGGAAACGATGTAGTGGTGTCAGATGTCAATGGAGCTATGCTTAGTTTACGAAAGCGTCGAATGTTTGTTAAAGCCTTGCAGCTTTCG CAGTGGTTAGAGACGAGCAAGAAAGTTGATTTTGTCGAAGACGACTATGCTTCGCGGGTTGATTTGATAGCCAAGGTCCGTGGGATGCACAATGCAGAGA GCTACGTCCAAAGCATCCCGGACATGTTTAGAGGAGAAGTAATGTACTCGAAATTGCTAGCAAACTGCGTTGCCACCAGTGATGTAAATGGAGCCGAGAA AGTGTTCGAAAAAATGAAGGAGTTGGGGTTTCAAAGGACGGCATTCGCCTGCAACCAGATGCTCATTCTCTACAAGAGGCTTGACAAGAACAAGATAATC CATGTTCTGTTGGTGATGGAGAAGGAAGATGTGAAGCCGAATCCCTTAACGTACAAACTCTTGATCGACGCAAAGGGTGAAGCAAACGACTTGACAGGGA TGGACGAAGTGGTGGCCGCAATGAATGCTGATGGTCTTGAACCGGACCTTTCCACTCTAGCTAACATGGCCAAGCACTACTCGCACGGTGGGCTTATCGA AAAAGCCGAAGTTATTCTCAAGAAGATTGAAGGTGGCAATTTGGAAGAGCATCGCTCGGTCTGTCAAGTTTTGCTCCCACTCTACGCCGCTCTGGGAAAG GCCGGCGAAGTTGGGAGGGTATGGAAAGTCTGCGAGAACGAGAAGTCGAGCCCTAATCTTGCAGAGTGCGTTGCTGCCATCGAAGCATGGGGGAAGCTCA ACAGAGTGCAGGAAGCAGAGTCGGTTTTTGGTACAATGGAACAGAAATGGGGGAACGTAATGTCTTCGAGACAGTACTCAGCGATGTTAAATGTGTACGC AAACAACAAGATGGTGGAGAAAGGGAAAGAGTTGGTGAGGAAGATGAAGGAGAAGGGGTGCAAGGCCGGTCCTTTAACTTGGGATGCAATGGTGAAGCTG TACGTGGAAGCAGGAGAAGTTGAGGAAGCGGACTCGATGCTGCACAAGGAAGTGTATAATAACAAGGTCAAGCCGATATTCAGGTCGTACATGATGATGT TGGAATGTTACTCGAAGAGGGGGGATGTTCATAATGCGGAGAAGATATTCTTCAGAATGAGAACGGCTGGTTACGCTGCTCGTCCAAGGCAGTTCGAAGC TCTTGTTCAGGCGTATGTAAATGCGAAGGTGCATGCTTATGGGATGAGGGAGAGAATGAAGGGAGATAACATATTCCCCAGCAAGGCGTTGATGGAGCAG CTTGCGAAAGTTGATGCGTTTCGGAGGCCATCAGTGTCGGCTCGGCTCCACGACTGA
AA sequence Show only first row Show all	>Lus10031004 pacid=23166836 polypeptide=Lus10031004 locus=Lus10031004.g ID=Lus10031004.BGIv1.0 annot-version=v1.0 MWALRRTPCSVKSQGVKLGTSRAAGFVKLFDQVYLNSNFLGTSHVASSYSSCSCYLLQRPSTVSLKVFTTGMGREFSSRAGKVVTSLSKDDDDDDPFSEL QGPVSTSGEENEDNDDNEESSKYVLGFSDTETDPSEKLMTAKTFSNNKLLNAILSSSFLPVEAVMNSWVQEGNDVVVSDVNGAMLSLRKRRMFVKALQLS QWLETSKKVDFVEDDYASRVDLIAKVRGMHNAESYVQSIPDMFRGEVMYSKLLANCVATSDVNGAEKVFEKMKELGFQRTAFACNQMLILYKRLDKNKII HVLLVMEKEDVKPNPLTYKLLIDAKGEANDLTGMDEVVAAMNADGLEPDLSTLANMAKHYSHGGLIEKAEVILKKIEGGNLEEHRSVCQVLLPLYAALGK AGEVGRVWKVCENEKSSPNLAECVAAIEAWGKLNRVQEAESVFGTMEQKWGNVMSSRQYSAMLNVYANNKMVEKGKELVRKMKEKGCKAGPLTWDAMVKL YVEAGEVEEADSMLHKEVYNNKVKPIFRSYMMMLECYSKRGDVHNAEKIFFRMRTAGYAARPRQFEALVQAYVNAKVHAYGMRERMKGDNIFPSKALMEQ LAKVDAFRRPSVSARLHD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	0	1
AT5G08010			unknown protein		Lus10040520 [exp]	1.0	0.9067
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	3.5	0.8605
AT3G09860			unknown protein		Lus10001400 [exp]	3.7	0.8768
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10042038 [exp]	8.4	0.8435
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Lus10017757 [exp]	8.8	0.8488
AT2G28230			TATA-binding related factor (T...		Lus10030654 [exp]	8.9	0.8571
AT2G44850			unknown protein		Lus10042906 [exp]	9.6	0.8146
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	10.6	0.8346
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10001559 [exp]	14.3	0.8083
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	18.3	0.8487

Compare expression of checked genes

Lus10031004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.