Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77760 543 / 0 GNR1, NIA1 nitrate reductase 1 (.1) AT1G37130 537 / 0 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT5G17770 129 / 1e-33 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT5G20080 101 / 2e-23 FAD/NAD(P)-binding oxidoreductase (.1) AT2G32720 84 / 3e-19 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G48810 77 / 9e-17 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT5G53560 73 / 2e-15 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT1G26340 72 / 7e-15 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT1G60660 63 / 7e-12 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT2G46650 54 / 1e-08 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035402 [exp] 721 / 0 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10038977 [exp] 624 / 0 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 615 / 0 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1) Lus10020310 [exp] 131 / 2e-34 AT5G17770 474 / 5e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10005682 [exp] 129 / 1e-33 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10026774 [exp] 125 / 4e-32 AT5G17770 425 / 1e-151 NADH:cytochrome B5 reductase 1 (.1) Lus10008407 [exp] 125 / 4e-32 AT5G17770 427 / 4e-152 NADH:cytochrome B5 reductase 1 (.1) Lus10033405 [exp] 124 / 8e-32 AT5G17770 359 / 2e-125 NADH:cytochrome B5 reductase 1 (.1) Lus10014491 [exp] 102 / 4e-24 AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088600 [exp] 580 / 0 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.005G172400 [exp] 571 / 0 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.004G194400 [exp] 134 / 2e-35 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.009G157000 [exp] 125 / 4e-32 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.013G067300 [exp] 123 / 2e-31 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 117 / 1e-29 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.006G218600 [exp] 109 / 3e-26 AT5G20080 511 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Potri.012G024600 [exp] 77 / 1e-16 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.002G242500 [exp] 75 / 7e-16 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.017G054300 [exp] 74 / 2e-15 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03404 [flax] [poplar] Mo-co_dimer Mo-co oxidoreductase dimerisation domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain CL0091 [flax] [poplar] PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain CL0076 [flax] [poplar] FAD_Lum_binding PF00970 [flax] [poplar] FAD_binding_6 Oxidoreductase FAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031005 pacid=23166732 polypeptide=Lus10031005 locus=Lus10031005.g ID=Lus10031005.BGIv1.0 annot-version=v1.0 ATGGGTTTCCGGTTCGGATCATTATTCCCGGGGTTCATTGGTGGGAGGAGGGTGAATTGGTTGAGGAAGATAATTGTTATTAGTGAAGAGTCCGATAACT ATTATCATCATAGGGATAATCGGGTCCTACCGTCTCATGTTGAAGTCGAGCGTGCCAACTCCGAAGGTTGGTGGTACAAGCCAAAGTGCATGGTAAACGA GCTGAACATAAACTCGGTGATTTCAACTCCGTATCACGAAGAGATTCTGCCTATCAATTCATGGACTACTCAAAAGCCTTACACGTTAAAAGGATACGCA TATTCTGGTGAAACCCAGCATAGCAAGCGACACAAGGGAGAGATCGGGATCGTATTCGAATATCCAACCGTCCCAGGAAACCAATCCAGCGGCTGGATGG CTAAAGAGAAGCACCTCGAAATTAGCTCCTCTGACGACATCTGCACTTTGAAAAAGAGCATCTCCACTCCCTTCATGAACGCTTCTTCATGCAAGACCTT CACTGCCGGAGAAGTAAATAAACACAACTCCGTCGACTCTGCATGGATCATTGTCAACGGCCAAGTCTACAACTGCACTAGCTTCCTCAAAGACCATCGT GGTGGCTCCGATCGCATCCTTATCAATGCTGGAACCGACTGCACTGAAGAGTTCGAAGCCATCCACTCCGACAAGGCTCGAAAGGGCCTCGAGGACTACC ACATTGGTGAGCTGGTCAATATCCGGTCAAATGTCTCGTCGCCCAATGGCTCGGCCCATGGCGGCATGCCATGCACTTCGTCGTTTTCTCAATTGGCCTC TGTTGTCGAGACAAGATTATCGTCCAAAACGCAAAATGTGGCATTGGCCCTGGGCGGGAAGTTTTCGTGCAAGTTGGTGGAAAAAGAATCGCTCTCTCGC GACGTTCGATTGTTTAGATTTGCGCCCCCTAAGGAGGAACAGGTGCTAGGGCTTCCCATTGGAAAACACATATTCATATGTGCTACGGTGAACGGGAAGC TCTACATGCAAGCCTACACACTGACGTCCACTCTTCATACAATGGGCCATTTCGAACTTGTCGTGAAGGTCTACTTTGAAAAGGTCCACCCAAAGTTCCC TAATGGTGGAATCATGTCACAATATCTTGATTCGTTAGAGATCGGATCCTCTATTGAAGTGAAAGGACCATTGGGCCATATAAAGTACTTGGGACGAGGG AACTTCATGGTCCATGGGAAGCCGAAGTTCGGGAGGAAACTTGCCATGCTAGCCGGTGGGACCGGGATCATAGCAATATATCAGGTGGTCCAAGCCGTGT TGCGAGACCCGGAGGATCAAACAGAGATGTACATAGTGTATGCAAATCGGACAGAGGACGACCTCCAACTGTTGGATGAGCTAGACGAATGGGCCCGGAC GGATGAGAAATTGAAGGTTTGGTACGTGGTTAGCCAGTCGGTGAGGGCAGGATGGCGGTACAGTACGGGCTACATCACCGAAGGTATCTTAAGAGAGCAT ATACCAGGTGGATCAAATGGTGAGGTATTGGCACTAGCTTACGGACCGCCACCGATGATTCAGTTTGCTGTTCAACCGAATCTGGAAAAGCTAGGTTACG ATGTAAAGGAGTCCTCGCTGGTGTTTTAG
AA sequence Show only first row Show all	>Lus10031005 pacid=23166732 polypeptide=Lus10031005 locus=Lus10031005.g ID=Lus10031005.BGIv1.0 annot-version=v1.0 MGFRFGSLFPGFIGGRRVNWLRKIIVISEESDNYYHHRDNRVLPSHVEVERANSEGWWYKPKCMVNELNINSVISTPYHEEILPINSWTTQKPYTLKGYA YSGETQHSKRHKGEIGIVFEYPTVPGNQSSGWMAKEKHLEISSSDDICTLKKSISTPFMNASSCKTFTAGEVNKHNSVDSAWIIVNGQVYNCTSFLKDHR GGSDRILINAGTDCTEEFEAIHSDKARKGLEDYHIGELVNIRSNVSSPNGSAHGGMPCTSSFSQLASVVETRLSSKTQNVALALGGKFSCKLVEKESLSR DVRLFRFAPPKEEQVLGLPIGKHIFICATVNGKLYMQAYTLTSTLHTMGHFELVVKVYFEKVHPKFPNGGIMSQYLDSLEIGSSIEVKGPLGHIKYLGRG NFMVHGKPKFGRKLAMLAGGTGIIAIYQVVQAVLRDPEDQTEMYIVYANRTEDDLQLLDELDEWARTDEKLKVWYVVSQSVRAGWRYSTGYITEGILREH IPGGSNGEVLALAYGPPPMIQFAVQPNLEKLGYDVKESSLVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10031005 [exp]	0	1
AT3G62710			Glycosyl hydrolase family prot...		Lus10034128 [exp]	6.9	0.7523
AT5G46030			unknown protein		Lus10014995 [exp]	7.1	0.8229
					Lus10005426 [exp]	9.2	0.7282
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10002600 [exp]	11.4	0.7622
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10021206 [exp]	13.2	0.7976
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	14.1	0.7946
AT2G15220			Plant basic secretory protein ...		Lus10019804 [exp]	14.1	0.7867
AT1G17930			Aminotransferase-like, plant m...		Lus10033415 [exp]	15.1	0.7493
AT1G64870			unknown protein		Lus10002022 [exp]	18.0	0.7317
AT1G48820			Terpenoid cyclases/Protein pre...		Lus10008613 [exp]	23.0	0.7563

Compare expression of checked genes

Lus10031005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.