Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68310 233 / 8e-80 AE7 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) AT3G50845 177 / 1e-57 Protein of unknown function (DUF59) (.1) AT3G09380 171 / 2e-55 Protein of unknown function (DUF59) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035403 [exp] 307 / 4e-109 AT1G68310 230 / 7e-79 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10035404 [exp] 253 / 3e-87 AT1G68310 199 / 8e-66 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10014311 [exp] 194 / 3e-64 AT3G50845 253 / 1e-87 Protein of unknown function (DUF59) (.1) Lus10026019 [exp] 194 / 3e-64 AT3G50845 253 / 9e-88 Protein of unknown function (DUF59) (.1) Lus10031007 [exp] 76 / 3e-18 AT1G68310 70 / 2e-16 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G098000 [exp] 258 / 1e-89 AT1G68310 257 / 2e-89 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Potri.001G135800 [exp] 254 / 2e-88 AT1G68310 243 / 8e-84 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Potri.005G123100 [exp] 192 / 1e-63 AT3G50845 237 / 2e-81 Protein of unknown function (DUF59) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0232 [flax] [poplar] NifU PF01883 [flax] [poplar] FeS_assembly_P Iron-sulfur cluster assembly protein
Representative CDS sequence Show only first row Show all	>Lus10031006 pacid=23166781 polypeptide=Lus10031006 locus=Lus10031006.g ID=Lus10031006.BGIv1.0 annot-version=v1.0 ATGGTGTCAGGGTTGATAAACGAAAACCCTATTATCTACGAAAAGAAAGAGCGGCGGCAAAGGCCTGCTTCGTCTGATGTCGACGAGTACTCTGCTGAGG CCATCGATCAACTGGAAGTAGACATAAAGGATCCAGAGCATCCTTACTCGTTGGAGGAGCTCAATGTAATATCGGAAGAGGCGATTGAAGTGGATGACAA ACGTAGTTATGTAAGGTGGGTGACGTTTACTCCCACAGTGGAGCATTGCAGCATGGCAACTGTAATTGGTCTTTGCTTGCGTGTGAAGCTCATGAGAAGC CTACCACCCCGTTACAAGGTGGATATAAGGGTTGCACCGGGAACACATGCAACTGAAGCTGCAGTGAACAAACAACTAAACGACAAGGAGCGAATAGCAG CAGCATTGGAGAACCCTAACCTTGTCGACATGGTTGACGAATGCCTAGCTCCATCATATGCTTGA
AA sequence Show only first row Show all	>Lus10031006 pacid=23166781 polypeptide=Lus10031006 locus=Lus10031006.g ID=Lus10031006.BGIv1.0 annot-version=v1.0 MVSGLINENPIIYEKKERRQRPASSDVDEYSAEAIDQLEVDIKDPEHPYSLEELNVISEEAIEVDDKRSYVRWVTFTPTVEHCSMATVIGLCLRVKLMRS LPPRYKVDIRVAPGTHATEAAVNKQLNDKERIAAALENPNLVDMVDECLAPSYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031006 [exp]	0	1
AT5G57230			Thioredoxin superfamily protei...		Lus10003582 [exp]	1.4	0.9373
AT3G07440			unknown protein		Lus10020404 [exp]	2.0	0.9449
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Lus10010592 [exp]	3.0	0.9139
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	5.9	0.9255
AT4G33100			unknown protein		Lus10033863 [exp]	6.2	0.8949
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	6.9	0.9237
					Lus10011965 [exp]	10.8	0.8706
AT5G52545			unknown protein		Lus10014958 [exp]	14.5	0.8724
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	14.8	0.8885
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	15.4	0.9365

Compare expression of checked genes

Lus10031006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.