Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10740 779 / 0 ATASD1, ARAF1, ARAF, ASD1 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) AT5G26120 774 / 0 ATASD2, ASD2 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 2, alpha-L-arabinofuranosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038988 [exp] 760 / 0 AT3G10740 972 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) Lus10027276 [exp] 737 / 0 AT3G10740 922 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) Lus10035405 [exp] 300 / 4e-98 AT3G10740 191 / 9e-57 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) Lus10031007 [exp] 55 / 3e-09 AT1G68310 70 / 2e-16 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025500 [exp] 791 / 0 AT3G10740 999 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) Potri.006G027700 [exp] 771 / 0 AT3G10740 999 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF06964 [flax] [poplar] Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031008 pacid=23166790 polypeptide=Lus10031008 locus=Lus10031008.g ID=Lus10031008.BGIv1.0 annot-version=v1.0 ATGACTCGCCTTAGTTTTCCGCAGCTGCTCTTCCTCATCATTCTCACCTGCTTACTCTACACCCGCCATTGTCATGCTCACAGCAGAACCAAATCTGCCG CCGCCGTCGCCGCATCTTTGAAAGTGGACGGTTCCGGAAACCACCGAACCATCCCCGACACCCTATTCGGTGTCTTTTTCGAGGAGATCAACCATGCCGG AGCTGGCGGACTCTGGGCGGAGCTCGTTAGCAACAGAGGGTTTGAGGCCGGCGGAAATGTGGCTCCGTCGAACATAGCGCCGTGGAACGTGTTCGGCGGC GATTACGCTATCAGCGTGGTGACCGAACCGACGTCGTTGTTTCTAAAGAACTTGATGGCGCTCCGGGTGGAAGTGATGTGCGACGGTGCCAGCTGTCCCA AAGGCGGCGTTGGGATTTACAATCCCGGCTATTGGGGGATGAATATCGAGCAAGGGAAGAGCTACAAGCTGGTTTTCTACCTGAGGTCATTGGGCCCGGT TGATTTAACTGTATCGTTGATGGGCTCCAATCGAGCCCAAACTTTGGCATCTCGAAACGTTTCAGGTGCATTTACTCGATGGAAGAAAATGGAGATGGTG CTTAAAGCTGGAAAATCAGACAGAGATGCAAGTCTCGTGTTTACAACTTATTCTAAAGCGGTCGTTTGGTTCGACCAAGTTTCTCTTATGCCATTCGACA CTTACAAAGGTCATGGGTTCCGATCGGACCTAACTAAATTGGTGGCCGATTTAAAACCGGCCTTCATTCGATTTCCTGGAGGATGCTTTGTGGAAGGTGA GTGGCTAAGGAATGCGGTCCGTTGGAAGGAAACGGTTGGACCATGGGAGAACCGACCCGGCCACTTCGGTGATGTATGGAACTACTGGACCGATGATGGA ATGGGCCATTACGAGTTCTTTCAGTTTGCTGAAGACATTGGTGCACTGCCCATTTGGGTGTTCAACAATGGCATTGCACACCAAGATCAAGCTGATACTT CCAGCATTGGACCTTTCATTCAAGAAGCATTAGACGGAATCGAGTTCGCGGTGGGCGACAAAAAATCGAAATGGGGATCGGTCCGAGCAAGAGTGGGACA CCCTGAGCCGTTCGATTTGAGATATGTTGCTGTAGGGAACGAAGACTGCTGGAAACCATTCTACCGAGGAAATTACCTCAAGTTCTTTAATGCAATTAGG AAGGCTTATCCTAAGATGAAGATCATATCCAACTGTGATTACACAGATCGAAATGTCAACAAACAGGACCCAGCTGACTACTATGATTTCCATACTTACA AAAATTCCAGTGAGTTGTTTGCGCAAAGGTTCACATTCGATAAAGTGCCACGCAAGGGTCCTAAGGCTTTCGTTAGTGAATATGCTGTATGGAGACACGA CGCTGGTAACGGTACTCTGCAAGCAGCATTAAGCGAGGCTGGATTTCTCATGGGGCTTGAAAAGAACAGTGACTATGTCAAGATGGCCTCATATGCGCCA CTGTTCGTAAACACGAACGATAAGATGTGGACCCCGGATGCCATCTATTTCGATTCGTTGAGTGCGTATGGTACTCCAAGCTATTGGATGCAGACGTTCT TCTCGCAGTCCAACGGTGCAACCCTCCTCACGGCCGAACTGGATGACAAATCCTCGTCCGAAATGGCTGCCTCTGCCATCATTTGGAAAGATGGTTCCAC CGGCAATTCGTACCTCAAAATCAAGGTGGTGAATGTCGGAGCGAACTCTGTTAATCTGAGTGTTGGAGTTAAGGGATTGAAGATTAGTAAGATGGATGCG AGGAAGACTGAATTGACGTTTTGGAATGTGACGGCAGAGAACACACTTGACCAGCCGCTTATGATCAAGCCGGTCCGGAGTGAGTTGAAGAATCCAAGTG ATAATATGAATATGCAATTGGCTTCACATTCTTTGACATCATTTGATTTGTTGCTAGCTAAATGA
AA sequence Show only first row Show all	>Lus10031008 pacid=23166790 polypeptide=Lus10031008 locus=Lus10031008.g ID=Lus10031008.BGIv1.0 annot-version=v1.0 MTRLSFPQLLFLIILTCLLYTRHCHAHSRTKSAAAVAASLKVDGSGNHRTIPDTLFGVFFEEINHAGAGGLWAELVSNRGFEAGGNVAPSNIAPWNVFGG DYAISVVTEPTSLFLKNLMALRVEVMCDGASCPKGGVGIYNPGYWGMNIEQGKSYKLVFYLRSLGPVDLTVSLMGSNRAQTLASRNVSGAFTRWKKMEMV LKAGKSDRDASLVFTTYSKAVVWFDQVSLMPFDTYKGHGFRSDLTKLVADLKPAFIRFPGGCFVEGEWLRNAVRWKETVGPWENRPGHFGDVWNYWTDDG MGHYEFFQFAEDIGALPIWVFNNGIAHQDQADTSSIGPFIQEALDGIEFAVGDKKSKWGSVRARVGHPEPFDLRYVAVGNEDCWKPFYRGNYLKFFNAIR KAYPKMKIISNCDYTDRNVNKQDPADYYDFHTYKNSSELFAQRFTFDKVPRKGPKAFVSEYAVWRHDAGNGTLQAALSEAGFLMGLEKNSDYVKMASYAP LFVNTNDKMWTPDAIYFDSLSAYGTPSYWMQTFFSQSNGATLLTAELDDKSSSEMAASAIIWKDGSTGNSYLKIKVVNVGANSVNLSVGVKGLKISKMDA RKTELTFWNVTAENTLDQPLMIKPVRSELKNPSDNMNMQLASHSLTSFDLLLAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10031008 [exp]	0	1
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10040425 [exp]	1.0	0.8492
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032434 [exp]	2.4	0.7752
AT5G42905			Polynucleotidyl transferase, r...		Lus10006008 [exp]	3.9	0.7742
AT1G80930			MIF4G domain-containing protei...		Lus10011226 [exp]	4.5	0.7733
AT1G10380			Putative membrane lipoprotein ...		Lus10036702 [exp]	5.3	0.6019
					Lus10032314 [exp]	12.0	0.7365
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018098 [exp]	17.3	0.7234
					Lus10021684 [exp]	17.5	0.6394
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10013315 [exp]	17.7	0.6923
AT2G48020			Major facilitator superfamily ...		Lus10042676 [exp]	19.1	0.6565

Compare expression of checked genes

Lus10031008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.