Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40980 743 / 0 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035407 [exp] 1365 / 0 AT2G40980 760 / 0.0 Protein kinase superfamily protein (.1) Lus10037692 [exp] 545 / 0 AT2G40980 457 / 5e-152 Protein kinase superfamily protein (.1) Lus10015685 [exp] 539 / 0 AT2G40980 444 / 4e-146 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173100 [exp] 1075 / 0 AT2G40980 750 / 0.0 Protein kinase superfamily protein (.1) Potri.008G083300 [exp] 1055 / 0 AT2G40980 745 / 0.0 Protein kinase superfamily protein (.1) Potri.004G137600 [exp] 625 / 0 AT2G40980 523 / 1e-177 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031009 pacid=23166840 polypeptide=Lus10031009 locus=Lus10031009.g ID=Lus10031009.BGIv1.0 annot-version=v1.0 ATGACGAATTTCCACTTTCCTTCGAATTTGGCAGGTGCGGGTGGATCTCCAGATGGGGAATCAGTGGGGTCAGGAGCGAGGAGATCGAGTATTACGTCAG TTAGCAAGTCTCACCGTCGTCGGGAGTTTCTAGACAGGTTAGTGGACTGCGAAACTTTGACCGACCGATTAGGGGACTGGTTCGAATCCTTCTCCGGACC GAAACGGCCTGCGCTTGAAGTACCTTTCGAGCTGATAGAGCTTCAGAAGTTTGACTATGCGTTGGAAGGGGTTTCGTTTCAGCAGTTGATCCGGATGCCA AGTGCTGTCTACGCATCTTCATCTGAGACAGTAGAAGCAACTGCCGTATTAGCAGTTGAAGATTTCCTCCACGCAGGGGTGAAAGGATTGTGGGAAGCAT TTTGGAGTCAGGATGGTGGTGATGCTCCAATGCCATTCTCGGTTGCTTGTCTGTACAGTGAGAATTTGAAGTTCTACCAGGCTGAGAAGGCCATAGCCAG CGGGAAGCTTGAGGGTTTATGTGCCACTGGTATTTTAGTCAACAATCCTAGACATCCACATGGTAAATGGGATCAGATTCTTGAGTTGGCCCTTCTGAGG CCTGATATCGGCAGCCTAGCTGCCATTGGAGGCGACCCGCAACCTTCTCAGGCTGTTTTAGGTGAGGCCCTCTTTTATGCTTTACGTGTACTGTTATCCA GGAAGCTAGGGAGGTTTTACCCTGCTGAGAATCTAGACACAGTCTTTGTTCTTCTTGTTGATTCCCAGTATGGAGGGGTTGTGAAAGTGGAAGGCGATGT AAATAAATTGGAGTTGGATGTGAATAACGTTTATGAAAGTTGTGCCAATTGGATAACAAGGCATTCTAGGATTTCAGTCTCTCCTATAGATAGGATATGG AACAAACTTGGGAATGCCAACTGGGGAGACATTGGTGCTCTACAGATCCTCTTCGCAACGTTCCACTCGATAATGCAGCTTGCAGGGACGCCAAAGCACT CAATCGAAGATTTAGCTGCTGACCATAGTTCTCGTCTACAAGCAAGAAGAATAGAGAGGCAGGTGGGGGATACTCGAGTTAATGGGAACGGAATGTTCCG GTTCCAGCAAAATAGCATCACTCCTGAGATTGTGGAAGTTCCGGATGAAGCAGTTCATGTTGAGTCTGAAGAGCTTATAATGAAATTGGAAGTCGGTTCC GTCCTATGGTTGGATGACTCAGACCAACAGAAGGGTTACCAAATAAATGGTGACCTGTTCAATGGTGAACTAATGTATTATATTGCTTCACCTGTGGAAG ATCCCAGTAAAACCTATTTCCTTTATGTTGGTTCTCACCCTTCACAGTTTCAACCGGCGTCCGAGGATATGACGTTGTGGTATCAGGTCCAGAGACAGAC TAAAATATTAACCATAATGAGGCAGAAAGGCGTCTCCAGCAAATACCTCCCGCAATTGAGTGCTTCAGGCAGGATTGTCCACCCGGGTCAATGCCGGAAA CCTAGCTCCGGTGGCAATTGCAATCATCCTTGGTGCTCTACTCCAATCCTCGTCACCAGCCCGGTCGGTGAGACAGTCGCTGACATGATAATGGGAGGAA GATTCGGCGCAGAAGAAGCAATCAGGTGTTGTCACGATTGTTTATCAGCACTTTCTGCGGCCGCCTCTGCAGGAATTAGACACGGAGATATCCGGCCGGA AAACATGATCAGTTCAAGGTCCAGCAATCAGCACCCTCCTTACTTTGTCCTGATCGGCTGGGGTCATGCAATCCTTGAAGACAGGGACCGTCCAGCAATG AACCTCCATTTCTCGTCTACCTACGCTCTCCAAGAGGGCAAATTATGCTCAGCTTCTGACGCAGAGAGCCTCGTTTACATGCTTTATTTTTCATCAGGTG GGGAAATGCCTGATCTAGACTCGGTAGAAGGAGCATTGCAGTGGAGAGAGACCTCTTGGTCAAGGAGGCTGATCCAGCAGAGGCTCGGCGATGTATCCAC TGTATTGAAAGCGTTTGCCGACTACGTGGATAGCCTCTGCGGAACTCCATATCCCATCGATTACGAGATATGGATAAGGAGGTTGAGGAGGAACTTCCGC GATGTAGACCGTGGCAAAGAGATCGAATCGTCAGGTTAA
AA sequence Show only first row Show all	>Lus10031009 pacid=23166840 polypeptide=Lus10031009 locus=Lus10031009.g ID=Lus10031009.BGIv1.0 annot-version=v1.0 MTNFHFPSNLAGAGGSPDGESVGSGARRSSITSVSKSHRRREFLDRLVDCETLTDRLGDWFESFSGPKRPALEVPFELIELQKFDYALEGVSFQQLIRMP SAVYASSSETVEATAVLAVEDFLHAGVKGLWEAFWSQDGGDAPMPFSVACLYSENLKFYQAEKAIASGKLEGLCATGILVNNPRHPHGKWDQILELALLR PDIGSLAAIGGDPQPSQAVLGEALFYALRVLLSRKLGRFYPAENLDTVFVLLVDSQYGGVVKVEGDVNKLELDVNNVYESCANWITRHSRISVSPIDRIW NKLGNANWGDIGALQILFATFHSIMQLAGTPKHSIEDLAADHSSRLQARRIERQVGDTRVNGNGMFRFQQNSITPEIVEVPDEAVHVESEELIMKLEVGS VLWLDDSDQQKGYQINGDLFNGELMYYIASPVEDPSKTYFLYVGSHPSQFQPASEDMTLWYQVQRQTKILTIMRQKGVSSKYLPQLSASGRIVHPGQCRK PSSGGNCNHPWCSTPILVTSPVGETVADMIMGGRFGAEEAIRCCHDCLSALSAAASAGIRHGDIRPENMISSRSSNQHPPYFVLIGWGHAILEDRDRPAM NLHFSSTYALQEGKLCSASDAESLVYMLYFSSGGEMPDLDSVEGALQWRETSWSRRLIQQRLGDVSTVLKAFADYVDSLCGTPYPIDYEIWIRRLRRNFR DVDRGKEIESSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40980			Protein kinase superfamily pro...		Lus10031009 [exp]	0	1
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	1.0	0.8979
AT2G40980			Protein kinase superfamily pro...		Lus10035407 [exp]	3.7	0.8925
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Lus10000751 [exp]	5.7	0.8316
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10033706 [exp]	5.9	0.8572
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10026230 [exp]	6.0	0.8540
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10012332 [exp]	6.7	0.8651
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	10.6	0.8675
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10036540 [exp]	14.0	0.8408
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	15.0	0.8568
AT5G20300		Toc90	translocon at the outer envelo...		Lus10027712 [exp]	16.0	0.8349

Compare expression of checked genes

Lus10031009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.