Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40840 1063 / 0 DPE2 disproportionating enzyme 2 (.1) AT5G64860 100 / 9e-22 DPE1 disproportionating enzyme (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035408 [exp] 1498 / 0 AT2G40840 1078 / 0.0 disproportionating enzyme 2 (.1) Lus10035845 [exp] 103 / 1e-22 AT5G64860 811 / 0.0 disproportionating enzyme (.1) Lus10036626 [exp] 92 / 5e-19 AT5G64860 482 / 1e-165 disproportionating enzyme (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G031700 [exp] 1073 / 0 AT2G40840 1492 / 0.0 disproportionating enzyme 2 (.1) Potri.016G028900 [exp] 1071 / 0 AT2G40840 1481 / 0.0 disproportionating enzyme 2 (.1) Potri.007G081400 [exp] 107 / 8e-24 AT5G64860 849 / 0.0 disproportionating enzyme (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF02446 [flax] [poplar] Glyco_hydro_77 4-alpha-glucanotransferase
Representative CDS sequence Show only first row Show all	>Lus10031010 pacid=23166783 polypeptide=Lus10031010 locus=Lus10031010.g ID=Lus10031010.BGIv1.0 annot-version=v1.0 ATGGAAAATTTGGGGATGTCTTTAGGGGCCAAATCAACGAAATCGGTGAAAGTGAGCTTTAGAATACCGTATTTCACCAACTGGGGTCAGAGCCTTGTTG TGTGTGGCTCTGAACCTGCGCTGGGGTCTTGGAATGTGAAGAGGGGCTTGTTATTGAGCCCTGTTCATCAGGATGATGAGCTTATCTGGTCCGGAACTGT GACGGTGCCGGAAGAGTTCAGCTGTGAGTATAGCTATTATGTGGTGGATGATGAGAAGAATGTAATGAGGTGGGAGATGGGGAAGAAGCGTCAAGTTTTT CTTCCTAAAGGGATCAATGGTGGAGATATTGTCGAGTTTCGAGATCTCTGGCAGACGGGGGATGATGATATCCCTTTCAGAAGTGCCTTCAAAGATGTCA TCTTTAACTCAAGTTGGAAAATGAAGGTTGAGAGACCCTTAGGTGTGCAGAATAAGTTGGAGAAGGAAGATTCCGTTCTTGTCCATTTCAGGATTTGCTG TCCAAACATGGAGGAAGGGACTTCTGCAATGCCATGGCGAGGAACTGGTGTTTCTGTACCGATGTTCTCTGTTAGATCAGAACATGATCTTGGTGTTGGA GAGTTTCTTGACTTGAAACTTCTTGTTGACTGGGCCGTGGAATCTGGATTCCATCTAGTTCAGCTTCTCCCTATCAATGACACCTCTGTGAATGGGATGT GGTGGGACTCCTATCCGTACAGGATGCTCAACATTCACTGTCAACTACCCATAAGCCTTAGAGGTCCAGGTTATCGTCATGTTGAACCTTTTCCATCTCT GCGTGTTGACTTGCAGAAAGAGATACAGGAGGCTAAGGAGCGGCTTGATGGAAAGGAAGTTGATTATGAGGCTAGTCTGGCTACTAAATTGTCGATTGCC AAAAAAGTATTCGCTAAAGAAAAGGATGCAGTACTGAACTCCAGCGCATTTCAGGAATTCTTCTCAGAAAATGAGTTTTATCTCCTGACATTCATGCCAA ATTTTCTGACGTCTTACCCCTCTATGCTGTTTAAACTATGGAAGGAATGGTTAAAACCATATGCATCCTTCTGTTTCTTGAGGGACTTCTTTGAAACATC TGATCACAGCCAATGGGGCCGGTTTTCTGATTTTTCGAAAGAGAAGCTGGAGAAGCTTGTCTCAAAGGATAATCTGCACTATGACATCATTTGTTTTCAT TACTATATCCAGTTCCACTTACATATTCAGCTGTCTGAAGCTGCACAATATGCAAGAAAGAAAGGTGTGGTGTTGAAGGGAGATTTGCCTATTGGTGTTG ACAGAAATAGTGTGGATACGTGGGTTTATCCTACCTTATTCCGTATGAATACCTCCACTGGAGCTCCACCAGATTACTTCGACAAAAACGGGCAGAACTG GGGATTTCCAACTTATAACTGGGAGGAGATGTCAAAAGACAACTATGGTTGGTGGCGTGCTCGATTGACACAGATGTCAAAGTACTTCACAGCCTACAGG ATTGATCATATACTAGGTTTCTTTAGAATCTGGGAGCTTCCAGATCATGCGATGACAGGACTAATTGGAAAGTTCCGACCTTCGATCCCCTTGAGCCAAG AAGAGCTAGAGAAAGAAGGAATTTGGGACTTCGATCGTTTGAGTCGCCCATACATTCGTCAAGAATTCTTACAGGAAAAATTCGGCAAGTTCTGGGCAGT TATTGGTTCCACTTTCCTGAACGAGATTCAGAAAGGATTTTATGAGTTTAAGGAGGATTGCAATACAGAGAAGAAAATTGCTACCAAAGTGAAGACCATG GCAGAAGAATCACTGTTATCAGATGGTGAAGACAAGATACGACGTGATCTCTTCGATCTTCTTAAGAATATAGTTCTTATAAGAGATCCAGAGGATGCAA GGAAATTCTATCCGCGTTTCAACCTTGAGGACACTTCAAGTTTCCAGGATTTGGATGAGCAAAGCAAGCATGTCCTGAAAAGACTGTACTATGATTATTA TTTCCATCGCCAAGAAGAGCTATGGCGGAAAAATGCTATGAAGACATTACCTGTTCTTCTCAATTCATCAGACATGCTCGCCTGCGGTGAAGATCTTGGA CTCATACCAGCTTGTGTTCACCCTGTGTGCGCTCCATCATGTCATGACTGTTCTACGTTACGAGCTTGGTGGGAGGAAGATGCTGAAAGAAGACAGCGAT ACTTTAAGAGCATCATAGGGTCTGATGAATTGCCTCCTGATACATGCCTTCCTGCAATTGCACATTTCATCATCAGGCAACATGTTGAGTCCCCATCCAT GTGGGCAATCTTCCCGTTACAGGACTTGTTGGCTCTAAAAGAGGAATACACGAAACGTCCTGCGGATGAGGAGACGATCAATGACCCCACAAATCCAAAG CACTACTGGAGATACCGTGTACATGTCACATTGGAAACTCTGATGAAGGACAACGAACTGAAATCCACCATAAAAGCTCTGGTATCTGGGAGTGGAAGAT CATACCCTGGAGCTGCTGCATCGACCGCAAAGCAACAAGTTGCGAGCAATGGCAAAGTTGCAGGAAAGTAA
AA sequence Show only first row Show all	>Lus10031010 pacid=23166783 polypeptide=Lus10031010 locus=Lus10031010.g ID=Lus10031010.BGIv1.0 annot-version=v1.0 MENLGMSLGAKSTKSVKVSFRIPYFTNWGQSLVVCGSEPALGSWNVKRGLLLSPVHQDDELIWSGTVTVPEEFSCEYSYYVVDDEKNVMRWEMGKKRQVF LPKGINGGDIVEFRDLWQTGDDDIPFRSAFKDVIFNSSWKMKVERPLGVQNKLEKEDSVLVHFRICCPNMEEGTSAMPWRGTGVSVPMFSVRSEHDLGVG EFLDLKLLVDWAVESGFHLVQLLPINDTSVNGMWWDSYPYRMLNIHCQLPISLRGPGYRHVEPFPSLRVDLQKEIQEAKERLDGKEVDYEASLATKLSIA KKVFAKEKDAVLNSSAFQEFFSENEFYLLTFMPNFLTSYPSMLFKLWKEWLKPYASFCFLRDFFETSDHSQWGRFSDFSKEKLEKLVSKDNLHYDIICFH YYIQFHLHIQLSEAAQYARKKGVVLKGDLPIGVDRNSVDTWVYPTLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQMSKYFTAYR IDHILGFFRIWELPDHAMTGLIGKFRPSIPLSQEELEKEGIWDFDRLSRPYIRQEFLQEKFGKFWAVIGSTFLNEIQKGFYEFKEDCNTEKKIATKVKTM AEESLLSDGEDKIRRDLFDLLKNIVLIRDPEDARKFYPRFNLEDTSSFQDLDEQSKHVLKRLYYDYYFHRQEELWRKNAMKTLPVLLNSSDMLACGEDLG LIPACVHPVCAPSCHDCSTLRAWWEEDAERRQRYFKSIIGSDELPPDTCLPAIAHFIIRQHVESPSMWAIFPLQDLLALKEEYTKRPADEETINDPTNPK HYWRYRVHVTLETLMKDNELKSTIKALVSGSGRSYPGAAASTAKQQVASNGKVAGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10031010 [exp]	0	1
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10035408 [exp]	1.0	0.8918
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Lus10028646 [exp]	4.5	0.8285
AT1G12330			unknown protein		Lus10004335 [exp]	8.1	0.7877
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10040680 [exp]	8.2	0.8363
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10033014 [exp]	10.5	0.7779
AT3G27520			unknown protein		Lus10022283 [exp]	11.7	0.7876
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10042356 [exp]	21.2	0.8005
AT3G06880			Transducin/WD40 repeat-like su...		Lus10036201 [exp]	21.8	0.7987
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10037093 [exp]	23.2	0.8342
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10002089 [exp]	33.7	0.7747

Compare expression of checked genes

Lus10031010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.