Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56490 208 / 1e-70 HIT3, HINT1 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) AT1G31160 176 / 3e-57 HINT2 ,HINT 2 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (.1) AT5G48545 51 / 1e-08 HINT3 histidine triad nucleotide-binding 3 (.1) AT4G16566 41 / 4e-05 HINT4 histidine triad nucleotide-binding 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035409 [exp] 228 / 2e-78 AT3G56490 224 / 1e-76 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Lus10036217 [exp] 186 / 2e-55 AT2G35110 2277 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Lus10025883 [exp] 52 / 1e-08 AT5G48545 223 / 1e-74 histidine triad nucleotide-binding 3 (.1) Lus10038220 [exp] 50 / 3e-08 AT5G48545 216 / 7e-72 histidine triad nucleotide-binding 3 (.1) Lus10028941 [exp] 48 / 3e-07 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G023700 [exp] 221 / 2e-75 AT3G56490 217 / 2e-73 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Potri.015G124700 [exp] 181 / 4e-59 AT1G31160 224 / 1e-75 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (.1) Potri.002G248800 [exp] 53 / 2e-09 AT5G48545 227 / 3e-76 histidine triad nucleotide-binding 3 (.1) Potri.003G076400 [exp] 43 / 7e-06 AT4G16566 210 / 3e-71 histidine triad nucleotide-binding 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0265 [flax] [poplar] HIT PF01230 [flax] [poplar] HIT HIT domain
Representative CDS sequence Show only first row Show all	>Lus10031011 pacid=23166764 polypeptide=Lus10031011 locus=Lus10031011.g ID=Lus10031011.BGIv1.0 annot-version=v1.0 ATGGCTTCCGAGAAAGATGCCGCTCTGGCCGCCGCCACAGCTCCGGTTCCCTCCGATGCTCTGACTATATTCGACAAAATCATCAACAAGGAAATCCCGG CTAATGTGGTTTACGAGGATGATAAGGTGCTAGCTTTCAGAGACATAAGCCCTCAGGCTCCCACTCATATTGTGATCATTCCTAAAGTCAAGGATGGCTT GTCAGGCTTATCAAAGGCTGAAGAGAGGCACTGTGAGATCCTTGGCCGCTTGATGTACACTGCCAAGCTGGTTGCTAAGCAGGAAGGACTGGAGGATGGC TTTAGGATTGTGATTAATGATGGACCAAAGGGATGCCAATCCGTCTATCATATCCACGTTCACCTTCTCGGAGGACGCCAAATGAACTGGCCTCCTGGCT AA
AA sequence Show only first row Show all	>Lus10031011 pacid=23166764 polypeptide=Lus10031011 locus=Lus10031011.g ID=Lus10031011.BGIv1.0 annot-version=v1.0 MASEKDAALAAATAPVPSDALTIFDKIINKEIPANVVYEDDKVLAFRDISPQAPTHIVIIPKVKDGLSGLSKAEERHCEILGRLMYTAKLVAKQEGLEDG FRIVINDGPKGCQSVYHIHVHLLGGRQMNWPPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	0	1
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	1.0	0.9458
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	2.8	0.9150
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	5.5	0.9308
AT1G74940			Protein of unknown function (D...		Lus10011923 [exp]	6.0	0.9328
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10000496 [exp]	7.7	0.9286
AT4G40042			Microsomal signal peptidase 12...		Lus10015793 [exp]	8.1	0.9112
AT2G25670			unknown protein		Lus10017738 [exp]	10.1	0.9188
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10030497 [exp]	10.8	0.9093
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10005910 [exp]	10.8	0.8916
AT5G27430			Signal peptidase subunit (.1)		Lus10004463 [exp]	10.9	0.9171

Compare expression of checked genes

Lus10031011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.