Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22330 684 / 0 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 641 / 0 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT5G26742 489 / 3e-165 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT5G62190 302 / 4e-94 PRH75 DEAD box RNA helicase (PRH75) (.1) AT1G55150 251 / 2e-76 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 251 / 2e-75 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 249 / 2e-74 DEAD box RNA helicase family protein (.1.2) AT5G63120 248 / 2e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G31970 243 / 4e-73 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G58570 240 / 7e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035410 [exp] 935 / 0 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027268 [exp] 721 / 0 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 712 / 0 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10001057 [exp] 477 / 6e-161 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10001425 [exp] 435 / 8e-145 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10015020 [exp] 313 / 3e-98 AT5G62190 778 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10038898 [exp] 313 / 6e-98 AT5G62190 768 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10027388 [exp] 299 / 1e-92 AT5G62190 804 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10031683 [exp] 261 / 3e-78 AT5G62190 748 / 0.0 DEAD box RNA helicase (PRH75) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G024100 [exp] 672 / 0 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.016G023100 [exp] 667 / 0 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.005G000500 [exp] 484 / 5e-163 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 483 / 9e-163 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.012G131000 [exp] 295 / 3e-91 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.015G133400 [exp] 293 / 1e-90 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.003G098800 [exp] 252 / 5e-76 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 251 / 5e-76 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 248 / 1e-74 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G007900 [exp] 248 / 6e-74 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10031012 pacid=23166854 polypeptide=Lus10031012 locus=Lus10031012.g ID=Lus10031012.BGIv1.0 annot-version=v1.0 ATGTTAACATCTTCCCTCAGGCGTTCTCTGCCTCTGCGTGGTAGGCCGGCTGCTGTCGCCGCCTTGTCGGCATTCGAATCTGTACTTGCTGGCCACTCTA CTTCGCCAATCCCAAATCCTCCTTCCGCCGCCGCAGCTTCCATCCCCTCGGGAAAGGGTTTCCTCTCCTTCGGTTTCGGAGCTACATCTTCGACCAACGT AGGATTTCACTCGCAAGCTGGTAGATTGAATTACAAGGCGTCTACGACTTCCCAGGCTGAGTTCGCGATCGATCATTCTGGCTATGACGAGGACAGGAGC GGCAGTAGTGCTACTAGTAAGGCAGATGAAGGGCTTGCAATTTCGAAGCTTGGGATTTCTCAGGAAATTGTTACTGCTTTGGCCAATAAGGGAATCAGTA GCCTCTTTCCCATTCAGAGAGCTGTTCTTGTACCTGCAATGGAAGGAAGAGATCTGTTTGGCAGGGCTAGGACAGGAACAGGAAAGACGCTCGCTTTTGG GATTCCAGTTATCGACAAAATCCTGAAGTTTAACGCCAAGCATGGACGTGGAAGGAATCCTTTGGCTTTAGTTATGGCGCCAACCAGAGAGCTTGCTCGC CAAGTAGAGAAAGAGTTCCGTGAGTCTGCACCTAGTGTTGACACAATCTGCCTCTATGGTGGTACGCCCATTCAGCAGCAGATGAGGGAGCTTGATTATG GCACTGATATTGTTGTTGGCACACCTGGTCGTGTTATCGATCTGATGAAGAGGGGGGCTTTGAACTTGTCGGAAATTCAGTTTGTTATTCTTGATGAGGC GGATCAGATGCTTAATGTGGGCTTTGTAGATGATATACAAACGATTTTTCAAAAGTTGCCAGCAAAGCGTCAGAACATGTTGTTCTCTGCTACAATGCCA AGTTGGATTCAGAACCTTATCAGGACTTACCTAAAAAACCCACTAACCATTGACCTGGTTGGAGATTCGGATAAGAAGCTGGCCGACGGGATTACCCTTT ACTCAATTGTGTCAGAGTCTTATCAGAAAGCATCAGTCCTTAGTCCTCTGATCACAGAACATGCAAAAGGAGGGAAGTGTATTGTTTTCACTGAAACGAA ACGTGATGCGGACCGTTTGGCATATGCTATGTCAAGAAGTCTTAAATGTGAACCGTTGCATGGAGATATCTCTCAGATGCAAAGAGAAAGGACACTTGCA GGGTTTAGAGATGGGCAATTCAATATATTAGTTGCAACTGATGTTGCGGCACGTGGTCTTGATGTACCCAACGTTGATCTGATTATACACTATGCTATTC CGAACTCTCCCGAAACATTTGTCCATCGCTCGGGTCGTACTGGTCGCGCTGGAAAGAAAGGAACTGCCATTCTCATTTATGGCTCAGATCAGAGCAGGCA ACTGAAGATCATCGAACGGGAAGTAGGGTGCAGATTTACTGAGCTTCCTAAGATTGCTGGTGAGGCTGGAGCCATGGATATGATGAGTGACATGGGCGGG GGTGGTCGCTTTGGCTCATACGGAGGCTCAGGAGGCGGCCGATTTGGCGGTGGAAGCAGCGGTGGCCGATTTGGTGGTGGTTCAGGAGGACGTGGTGGAG GTTATGGCAGCCAGGGTGGCTTTGGTGTTGCGCGACGTGTGTGTCTTGGGTCTATGGGGGGGCACGAGCGGGGGAGTGGGGGGGGGGTTGGCCCCCCCCC CCAGCCAGTCAGGGGGCTATGGCGGGTCAAGTCAAGGTCGTAG
AA sequence Show only first row Show all	>Lus10031012 pacid=23166854 polypeptide=Lus10031012 locus=Lus10031012.g ID=Lus10031012.BGIv1.0 annot-version=v1.0 MLTSSLRRSLPLRGRPAAVAALSAFESVLAGHSTSPIPNPPSAAAASIPSGKGFLSFGFGATSSTNVGFHSQAGRLNYKASTTSQAEFAIDHSGYDEDRS GSSATSKADEGLAISKLGISQEIVTALANKGISSLFPIQRAVLVPAMEGRDLFGRARTGTGKTLAFGIPVIDKILKFNAKHGRGRNPLALVMAPTRELAR QVEKEFRESAPSVDTICLYGGTPIQQQMRELDYGTDIVVGTPGRVIDLMKRGALNLSEIQFVILDEADQMLNVGFVDDIQTIFQKLPAKRQNMLFSATMP SWIQNLIRTYLKNPLTIDLVGDSDKKLADGITLYSIVSESYQKASVLSPLITEHAKGGKCIVFTETKRDADRLAYAMSRSLKCEPLHGDISQMQRERTLA GFRDGQFNILVATDVAARGLDVPNVDLIIHYAIPNSPETFVHRSGRTGRAGKKGTAILIYGSDQSRQLKIIEREVGCRFTELPKIAGEAGAMDMMSDMGG GGRFGSYGGSGGGRFGGGSSGGRFGGGSGGRGGGYGSQGGFGVARRVCLGSMGGHERGSGGGVGPPPQPVRGLWRVKSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10031012 [exp]	0	1
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10035410 [exp]	1.4	0.9054
AT3G18600			P-loop containing nucleoside t...		Lus10027240 [exp]	2.4	0.9168
AT3G18600			P-loop containing nucleoside t...		Lus10038950 [exp]	4.6	0.8881
AT2G03640			Nuclear transport factor 2 (NT...		Lus10037066 [exp]	6.5	0.8755
AT4G17310			unknown protein		Lus10007477 [exp]	8.9	0.7826
AT3G15000			cobalt ion binding (.1)		Lus10032619 [exp]	11.8	0.8673
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10020542 [exp]	13.1	0.8688
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	14.1	0.8769
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	14.4	0.8852
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10004640 [exp]	18.7	0.8601

Compare expression of checked genes

Lus10031012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.