Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41370 659 / 0 BOP2 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT3G57130 632 / 0 BOP1 BLADE ON PETIOLE 1, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1.2) AT4G19660 147 / 2e-38 ATNPR4, NPR4 NPR1-like protein 4 (.1) AT5G45110 145 / 2e-37 ATNPR3, NPR3 NPR1-like protein 3 (.1) AT1G64280 123 / 9e-30 SAI1, NIM1, NPR1, ATNPR1 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) AT4G26120 116 / 2e-27 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT5G40160 50 / 1e-06 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT5G66055 50 / 2e-06 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT5G12850 45 / 0.0001 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT3G04710 45 / 0.0001 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035413 [exp] 825 / 0 AT2G41370 699 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10018289 [exp] 142 / 2e-36 AT5G45110 650 / 0.0 NPR1-like protein 3 (.1) Lus10040620 [exp] 137 / 2e-34 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1) Lus10038337 [exp] 135 / 3e-34 AT5G45110 575 / 0.0 NPR1-like protein 3 (.1) Lus10018756 [exp] 128 / 4e-31 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10036200 [exp] 103 / 3e-23 AT5G45110 489 / 6e-168 NPR1-like protein 3 (.1) Lus10024842 [exp] 82 / 1e-16 AT4G26120 316 / 7e-103 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10023973 [exp] 49 / 9e-06 AT2G47450 391 / 2e-135 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) Lus10041853 [exp] 47 / 3e-05 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043400 [exp] 699 / 0 AT2G41370 671 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.016G040500 [exp] 657 / 0 AT2G41370 639 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.002G056500 [exp] 167 / 3e-45 AT5G45110 518 / 1e-178 NPR1-like protein 3 (.1) Potri.015G117200 [exp] 159 / 2e-42 AT5G45110 656 / 0.0 NPR1-like protein 3 (.1) Potri.005G206100 [exp] 156 / 4e-41 AT5G45110 531 / 0.0 NPR1-like protein 3 (.1) Potri.012G118500 [exp] 150 / 2e-39 AT5G45110 644 / 0.0 NPR1-like protein 3 (.1) Potri.006G148100 [exp] 142 / 4e-36 AT1G64280 596 / 0.0 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Potri.012G118300 [exp] 135 / 1e-34 AT5G45110 566 / 0.0 NPR1-like protein 3 (.1) Potri.001G295200 [exp] 57 / 7e-09 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.013G042300 [exp] 51 / 1e-06 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0465 [flax] [poplar] Ank PF11900 [flax] [poplar] DUF3420 Domain of unknown function (DUF3420)
Representative CDS sequence Show only first row Show all	>Lus10031017 pacid=23166828 polypeptide=Lus10031017 locus=Lus10031017.g ID=Lus10031017.BGIv1.0 annot-version=v1.0 ATGAGTCTAGAAGACTCCTTCCGATCTCTATCCTTAGACTACCTCAACCTCCTCATCAACGGCCAAGCCTTCTCCGATGTAACCTTCAGCGTCGAGGGCA GATTAGTCCACGCCCATAAATGCATCCTCGCCGCCCGCAGCCTCTTCTTCCGCAAATTCTTCTGCTCTCCTCCAACCGACCACACCCCTAACTCCCCCTC CTCCGCCGGCTCCGGATCCGGCTCCCCTTCCTCCGGGTCACGACCGATCCCCGTCGTCATCGGCGCTGGATCCCCTACATCCCGGCACAACCAGCAGACT AGTAATAACAACAACAACAACAACAACGTCATACCCGTGAACTCCGTTGGGTACGAGGTCTTCCTCCTCATGCTACAGTTTCTTTACAGCGGACAGGTCT CGATTGTCCCCCAGAAACACGAACCCAGACCCAATTGCGGCGAACGCGGCTGCTGGCATACCCATTGCTCCTCCGCCGTCGATCTTGTTCTCGACACTCT CTCCGCTGCCCGCTACTTCGGCGTCGAACAGCTCGCCTTGCTCTCCCAGAAGCAGTTGGCTACAATGGTGGAGAAGGCTTCGATAGAGGACGTGATGAAG GTACTCATTGCTTCACGGAAGCAAGACATGCATCAACTATGGACGACGTGCTCCCACCTCGTCGCCAAATCGGGCTTACCGGCTGAAGTCCTAGCCAAGC ACCTCCCGATCGACGTGGTCGCGAAGATCGAGGAGCTTCGACTTAAATCCTCCCTCTCCCGCCGCAGCGGCAGCTCCTCTTCCCACCACCACGTCATGTC TCATCATCATCACGGCCACCATGACATGGCGGCGGATATTGAGGACCAGAAGATCCGACGGATGAGGCGCGCACTGGACTCGTCTGACGTGGAGCTGGTC AAGCTGATGGTGATGGGGGAAGGGCTCAACTTGGACGAGGCGTTGGCGCTGCATTACGCTGTGGAGAGCTGTAGTCGGGAAGTGGTGAAGGCGTTGCTTG AGCTGGGAGCCGCGGATGTTAATTATCCGGCCGGGCCCGCGGGGAAGACGCCGCTGCATGTGGCAGCGGAGATGGTGTCGCCCGACATGGTGGCGGTGTT GCTGGATCATCACGCCGATCCCAATGTTAGGACGGTGGATGGTGTGACGCCGTTGGATGTGTTGAGGACTTTGACGTCGGATTTCTTGTTTAAAGGTGCC GTTCCTGGGTTGGCTCACATTGAGCCCAATAAGTTGAGGCTTTGTCTCGAGTTGGTCCAGTCTGCGGCTCTGGTTATTTCGAGGGAGGAAGGTTCGACCA GCGATTGTGGGGCTGGGGTTGCGCAGGGTGGTTCGGTTGCCGGAGCGATTTACCCACCTTCAGGTGGGATGAGTGGTGGGAGTGGGAATTTGAACTTGGA TTCTAGATTGGTGTATTTGAACTTGGGGGCGAATGCCGGGTCGAGGATGGAGCAAGAAGACGAGAGTCAGAACCGGCACGATTCGACAATGTACCATCAT CAGCAGCATCAACACCACCACCACCAACACTTCTAG
AA sequence Show only first row Show all	>Lus10031017 pacid=23166828 polypeptide=Lus10031017 locus=Lus10031017.g ID=Lus10031017.BGIv1.0 annot-version=v1.0 MSLEDSFRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHKCILAARSLFFRKFFCSPPTDHTPNSPSSAGSGSGSPSSGSRPIPVVIGAGSPTSRHNQQT SNNNNNNNNVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCSSAVDLVLDTLSAARYFGVEQLALLSQKQLATMVEKASIEDVMK VLIASRKQDMHQLWTTCSHLVAKSGLPAEVLAKHLPIDVVAKIEELRLKSSLSRRSGSSSSHHHVMSHHHHGHHDMAADIEDQKIRRMRRALDSSDVELV KLMVMGEGLNLDEALALHYAVESCSREVVKALLELGAADVNYPAGPAGKTPLHVAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDVLRTLTSDFLFKGA VPGLAHIEPNKLRLCLELVQSAALVISREEGSTSDCGAGVAQGGSVAGAIYPPSGGMSGGSGNLNLDSRLVYLNLGANAGSRMEQEDESQNRHDSTMYHH QQHQHHHHQHF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Lus10031017 [exp]	0	1
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Lus10035413 [exp]	2.0	0.6975
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Lus10028189 [exp]	6.3	0.7291
AT2G35470			unknown protein		Lus10035375 [exp]	10.4	0.6783
AT5G14230			unknown protein		Lus10022339 [exp]	13.6	0.6876
AT5G01090			Concanavalin A-like lectin fam...		Lus10017194 [exp]	29.3	0.6823
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022045 [exp]	29.3	0.6454
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	38.0	0.6555
AT4G28100			unknown protein		Lus10039742 [exp]	41.5	0.6219
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009568 [exp]	42.4	0.6375
AT1G61150			LisH and RanBPM domains contai...		Lus10018464 [exp]	45.2	0.6552

Compare expression of checked genes

Lus10031017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.