Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56420 45 / 9e-05 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G59210 44 / 0.0001 F-box/RNI-like superfamily protein (.1.2.3.4) AT1G49610 43 / 0.0003 F-box family protein (.1) AT3G58880 43 / 0.0003 F-box/RNI-like superfamily protein (.1) AT2G04230 43 / 0.0004 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G59160 43 / 0.0004 F-box/RNI-like superfamily protein (.1) AT1G67390 42 / 0.0008 F-box family protein (.1) AT3G59170 42 / 0.0009 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005797 [exp] 67 / 9e-13 ND / Lus10014965 [exp] 60 / 2e-09 ND / Lus10031019 [exp] 54 / 6e-09 ND / Lus10028722 [exp] 56 / 3e-08 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10035669 [exp] 49 / 2e-07 AT3G58880 55 / 8e-10 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF07723 [flax] [poplar] LRR_2 Leucine Rich Repeat CL0022 [flax] [poplar] PF08387 [flax] [poplar] FBD FBD
Representative CDS sequence Show only first row Show all	>Lus10031018 pacid=23166772 polypeptide=Lus10031018 locus=Lus10031018.g ID=Lus10031018.BGIv1.0 annot-version=v1.0 ATGCAGGGATGCTCTGAAGTATTATTGCCTTGCCTTGATCCAGATGATCGAATCAGTCGGCTTCCCGATGACATCCTTGTGCAAACCGCCACCAGTCTCC TTTCCAGACGATGGAGATACCTGTCTGCATCCCTTCCTCGTCTCGACTTTGATTCCTACATCCTCAATGACGAGTCACCCCCTTTACATCGTCCGAAGCA GGAAGCCGAGTTCATCAAGCGTGGGTGGAAGTGTATCAAGTTTGTGTTGTCTAACAAGGTCCTGAACCTAGAACTGGACCTCAATCTCCCGCTGGGAGTG TATCATCCAGCAGAGCCCTATGTTTTTCAACATTTAGCTTTGAACAAAGGGGAAGATCCTTCGTTTGACGATCTTAAGTCGCTCAAATCTTTGTGCTTGA AGTCTGTCATGATGGCTGGGGATGTTTTGGAAGGTCTTTTGTCGACTTGCCCATTCCTTGAAATGCTAACGTTATGTAATTTGAGGTTGAAGCACTTGGA AATGGTTAGCAGTCCTGGATTGAATGAAATCGAGATATATGATGCACCAATTGTCTCATTGAAACGGTGGTGGTGTGGAGAGGTTGCTATTAGAATGAAC AAAGTTCCACACTTGGTTGAATTATCTATGTCAACATGTTTCACGGTGGCTGCTGATGAAATCCCATTGTTCTTCTGCCTCTCCCAGCTGGAGTCGTTGA AGCAACGCCTTTCTTCTCTTTATGATCGCAACCCTCTGGAACATAAAGTTTTATGTATGTTTTCCAAACTAACGAAGCTTAGAGAGTTGGAGATATTGTG TGAACCGGATTTGGTGAATGATTTCCTTCTACTGGTTCCCTTGATTGAATCATTGAAAAACTTGGAGAAGATTGTTATCCGGGTACTCCGCGCACCAACG ATCGAAAACATCGAAACCAGGACATTTAAAGAAGGGGCAGAGCCAAGTAGCAAGTTGAGGGAAGTTAACGGAGGTAATGGAGTGCTTGAACACTTAAAGC TGCTGGAATTTGCAGGATACCGTGTTGGAACAACCGAGGACGAGTTCATCTCGTATATAGCAAACAATGCAGCAGCCCTCGAGACCATCATCATCGATCT GAGTTACCAAAATGAACCTTCATTTTACCCCCCAGGAAAGAGGCTCGAAAATTTGAAGAGTTGGTGTTGTGTGTTGCTAAGCAGTGGCTTGAAAAAATCA TACCTCCCGGGGTCGAGTTGGTCATCCATGGTCTCAAGCAAGTAG
AA sequence Show only first row Show all	>Lus10031018 pacid=23166772 polypeptide=Lus10031018 locus=Lus10031018.g ID=Lus10031018.BGIv1.0 annot-version=v1.0 MQGCSEVLLPCLDPDDRISRLPDDILVQTATSLLSRRWRYLSASLPRLDFDSYILNDESPPLHRPKQEAEFIKRGWKCIKFVLSNKVLNLELDLNLPLGV YHPAEPYVFQHLALNKGEDPSFDDLKSLKSLCLKSVMMAGDVLEGLLSTCPFLEMLTLCNLRLKHLEMVSSPGLNEIEIYDAPIVSLKRWWCGEVAIRMN KVPHLVELSMSTCFTVAADEIPLFFCLSQLESLKQRLSSLYDRNPLEHKVLCMFSKLTKLRELEILCEPDLVNDFLLLVPLIESLKNLEKIVIRVLRAPT IENIETRTFKEGAEPSSKLREVNGGNGVLEHLKLLEFAGYRVGTTEDEFISYIANNAAALETIIIDLSYQNEPSFYPPGKRLENLKSWCCVLLSSGLKKS YLPGSSWSSMVSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59250			F-box/RNI-like superfamily pro...		Lus10031018 [exp]	0	1
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Lus10029875 [exp]	5.3	0.7068
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Lus10003122 [exp]	6.7	0.7755
AT1G16290			unknown protein		Lus10037104 [exp]	6.9	0.7902
					Lus10040041 [exp]	8.8	0.8341
AT2G25700		ASK3	SKP1-like 3 (.1)		Lus10043288 [exp]	12.2	0.8086
					Lus10024757 [exp]	14.3	0.8079
AT5G61120			unknown protein		Lus10030998 [exp]	15.2	0.7447
					Lus10014474 [exp]	15.4	0.7741
AT3G15650			alpha/beta-Hydrolases superfam...		Lus10002034 [exp]	19.4	0.7574
					Lus10017800 [exp]	26.6	0.7754

Compare expression of checked genes

Lus10031018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.