Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16210 88 / 3e-19 F-box family protein (.1) AT3G10430 85 / 5e-18 F-box and associated interaction domains-containing protein (.1) AT5G47300 77 / 2e-15 F-box and associated interaction domains-containing protein (.1) AT3G17490 76 / 6e-15 F-box and associated interaction domains-containing protein (.1) AT3G06240 76 / 7e-15 F-box family protein (.1) AT4G12560 76 / 7e-15 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G04690 75 / 1e-14 F-box and associated interaction domains-containing protein (.1) AT2G18780 74 / 2e-14 F-box and associated interaction domains-containing protein (.1) AT3G17280 73 / 5e-14 F-box and associated interaction domains-containing protein (.1) AT3G07870 73 / 6e-14 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029527 [exp] 298 / 1e-98 AT3G07870 70 / 6e-13 F-box and associated interaction domains-containing protein (.1) Lus10019739 [exp] 263 / 1e-86 AT3G06240 53 / 5e-08 F-box family protein (.1) Lus10039593 [exp] 234 / 3e-76 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10019738 [exp] 133 / 2e-37 ND / Lus10038606 [exp] 115 / 1e-28 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10026587 [exp] 114 / 5e-28 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10037892 [exp] 112 / 8e-28 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10013873 [exp] 109 / 1e-26 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10038603 [exp] 104 / 2e-24 AT3G06240 110 / 2e-26 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262900 [exp] 163 / 6e-47 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G121200 [exp] 130 / 2e-34 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207500 [exp] 125 / 2e-32 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 110 / 9e-27 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.008G006800 [exp] 109 / 2e-26 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G099733 [exp] 106 / 1e-25 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.001G318400 [exp] 104 / 6e-25 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.015G013800 [exp] 104 / 9e-25 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 100 / 3e-23 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.006G013000 [exp] 94 / 5e-21 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10031020 pacid=23166748 polypeptide=Lus10031020 locus=Lus10031020.g ID=Lus10031020.BGIv1.0 annot-version=v1.0 ATGACGGACAATCTTCCAGAAGATGTTGTGGTGAATATCCTAGCTAGATTGTTAATCAAGGAAATCGTCAAATGCCGGTCCGTCTGTAAATCCTGGTACT CTCTAATCTCAACCAAAAATTTCCAATCTTACCATCTTAAAAGATCTGCAGCTGCGAATCCTAGTTTGGTACTGTTTAGGCATGGTATTGATAAGAAGGA ACGAACAGAGCATTACAGCTTGTGCCTTCTTGATGATGATGATGATCACGCTTTCCCTCGCACTCGTATCCAGGAATTCGATTCCCCCTTCAAATCTGTC ATCCGCGAGTACCCAGCTCTCAGAATTGTGGGTTGCTGCAACGGTGTGGTTTGTTTCACCGACGATCACTACCATTTCATTCACAGAGCTGCTTTCTGGA ATCCATGTATTAGAAAGCTTGTTGAAATTCCTCCTCCACCGGCTGTCTCCAGAACGTTCAAGCCATATGGGGATACGGTAGGGTTCGGGTATGACGCTGT GAATGATGACTACAAGTTGGTGAGAGTATCGGTAGATCCTCTCGAGTGTCAACTGATTGAGATCTATTCGTGGAGATCTGGGGTTTGGAGAATGGTTGAC CACCAATTGAACTGTCTGATTAGGTACCGTTCTTCTTCAGTCCACATCAATGGAGTTTGCTACTGGCTGGCAAGTCGAAGGAAGCCAGGTTACAGCAACA TGATCATCTCGTTTGGATTGACCACCGAGGTGTTCGGCGAAATGCCTCCGGTACCAGATGACTTGGTGGAGGGCTCTAATGTGGCTCTTGTGGCTTCGTC GTGCAAGGGCTTACTTTCTTTGGTGCTTCTGGACAATGATCCTATCACAAACAAGGATTGTGCGACGATCTGGGTGATGAGAAAGGGTTCTTGGATCAAA GTTGTGGTTTGGGAATCTTCTTACGTGATATACAAGCTTCTGGCTTTCAAGGACAACGATGATGGTGTGGCTTTGTTCACAGCTGCTGTTGATTTGTTCG ATTCTGACGAATATCTGATTCGATATGACTTGAACAAGAGAGAGAAAACGGAGTTGATGGTAGTGAGACGTGCAGGTATACTTCATCTGATTGTTAATTA CGTTGAGAGTCTAGCGTTGCTGTAA
AA sequence Show only first row Show all	>Lus10031020 pacid=23166748 polypeptide=Lus10031020 locus=Lus10031020.g ID=Lus10031020.BGIv1.0 annot-version=v1.0 MTDNLPEDVVVNILARLLIKEIVKCRSVCKSWYSLISTKNFQSYHLKRSAAANPSLVLFRHGIDKKERTEHYSLCLLDDDDDHAFPRTRIQEFDSPFKSV IREYPALRIVGCCNGVVCFTDDHYHFIHRAAFWNPCIRKLVEIPPPPAVSRTFKPYGDTVGFGYDAVNDDYKLVRVSVDPLECQLIEIYSWRSGVWRMVD HQLNCLIRYRSSSVHINGVCYWLASRRKPGYSNMIISFGLTTEVFGEMPPVPDDLVEGSNVALVASSCKGLLSLVLLDNDPITNKDCATIWVMRKGSWIK VVVWESSYVIYKLLAFKDNDDGVALFTAAVDLFDSDEYLIRYDLNKREKTELMVVRRAGILHLIVNYVESLALL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10430			F-box and associated interacti...		Lus10031020 [exp]	0	1
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10006770 [exp]	1.4	0.8228
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10033491 [exp]	16.9	0.8277
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10004483 [exp]	23.0	0.7996
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	37.0	0.7874
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Lus10004392 [exp]	120.4	0.7582
AT2G04220			Plant protein of unknown funct...		Lus10039183 [exp]	126.6	0.7286
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000817 [exp]	151.8	0.7438
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10009374 [exp]	179.8	0.7392
AT3G19990			unknown protein		Lus10017359 [exp]	196.0	0.7324
AT1G20180			Protein of unknown function (D...		Lus10017348 [exp]	226.8	0.7276

Compare expression of checked genes

Lus10031020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.