Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 96 / 3e-22 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 82 / 1e-17 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 72 / 6e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31650 45 / 5e-05 B3 REM6 Transcriptional factor B3 family protein (.1) AT4G31640 45 / 8e-05 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31690 42 / 0.0007 B3 REM9 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035416 [exp] 713 / 0 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019353 [exp] 342 / 4e-117 ND / Lus10019873 [exp] 237 / 5e-73 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 219 / 5e-65 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10024689 [exp] 211 / 4e-63 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10032315 [exp] 213 / 2e-61 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 205 / 3e-61 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 186 / 5e-54 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10014043 [exp] 177 / 4e-51 AT3G19184 74 / 2e-14 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G042500 [exp] 499 / 1e-175 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 488 / 5e-171 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 301 / 6e-98 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 276 / 9e-89 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 255 / 3e-80 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 253 / 2e-79 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 108 / 7e-27 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 101 / 6e-25 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 102 / 7e-25 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 88 / 7e-20 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05266 [flax] [poplar] DUF724 Protein of unknown function (DUF724) CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10031022 pacid=23166706 polypeptide=Lus10031022 locus=Lus10031022.g ID=Lus10031022.BGIv1.0 annot-version=v1.0 ATGGGGGCAGCTGTGAAGAGGGAAATGGAAGACGGAGATTCCAGCAGAGCTTCCCCGATGCCGCATGCTGACTTCAAATCTGATGGAGAAGACGACGCTG CTCGATTCTCTCTCTCTCCTGATACTACTCACGCTAACCCCAACACCGACCTTGCTACTTCGCTCTCGGGTCTTCCTGGGCCATTCTGCAGAGCAAACTT ACCGCAGGAAGATACTACAGTTACTTTAGAAAATGAGGATGGAAAGGAATTTAACATCAAATACATTGGATACAAGACAGGATTGAGTGCTGGATGGAGA CAATTCTGTGTTGCACACAAGTTGCTTGAGGGAGATGTTTTGGTGTTCCAGTTAGTTGGGAACTGCAAATTCAAGGTTTACATTATAAGGGCTCATGATT TGGCTGAAGTGGATGGGGCGCTAGGCCTACTGAATTTGGATGCTCATATAAAACCAAACGATGCAGTTAATAATAGTATTGGGTTTTGGATGCCAGAGTT GATGGAAGAAAAAGGTAGCGTAAATACAGTAATGGCCATTGTACCCAGCAAAAGTGCCAAGAGAAATCGGTGTAGACCTCAATCGTCTTTCATCGGAAAG AAGAAACGGAAGACTAACAAGCCAAGATCATCATTTCAAACGACTGGGCAAACAACAGCCGAGCAATCTGAAAATGACAGTGAAGAGGTTGGTTCAGAAG TTTTAGAAGGTTTCAAATTATCCTTCCCCGGGATTCAGTTTAGAGACATCCAGAGCTTTGAGGACTTCAGCATTGTGATCGAGGGATTAGTCATAGATTC TGAACTATCTGAAGCAGCTCGGAACAAGTACTACAAGCTGTGTTGCAGTCAAAATGGTTTCCTTCACGAGGATCTCATAAAGGGACTCAATTTGAAGTTG ATTGCTGGCGTGATTTCCGAAACCGTCAACATTGCTAATGCCATAAGGGAGTGCAGTCTTTCAACTTCGCGGGATGAGTTTGCTACCTGGGATAAGACAT TGAGAGCCTCCGAGTTATTCGGCATGAATGTCGGATTTCTTCGTGAAAGGCTGAGACAGCTTGTGGGCCTTGCCTTCGATTCTGAAGATGCTACAAAAAG CAGAAGGTACATGGAAGCTAGAAGTGAAAGACTCCAGAACGAAGTTGAGATAAGAAATCTAGAAGCAAAGCTTGTAGAATTAAAAGCAGCGTATGAAAGG TCTGGATGTGATATGACTAGTCTGAAATCAAAAGCTGAAAGATACGAGCTCAAGTTTCAGAAACAAGTTGTCGCTCCATGGTAA
AA sequence Show only first row Show all	>Lus10031022 pacid=23166706 polypeptide=Lus10031022 locus=Lus10031022.g ID=Lus10031022.BGIv1.0 annot-version=v1.0 MGAAVKREMEDGDSSRASPMPHADFKSDGEDDAARFSLSPDTTHANPNTDLATSLSGLPGPFCRANLPQEDTTVTLENEDGKEFNIKYIGYKTGLSAGWR QFCVAHKLLEGDVLVFQLVGNCKFKVYIIRAHDLAEVDGALGLLNLDAHIKPNDAVNNSIGFWMPELMEEKGSVNTVMAIVPSKSAKRNRCRPQSSFIGK KKRKTNKPRSSFQTTGQTTAEQSENDSEEVGSEVLEGFKLSFPGIQFRDIQSFEDFSIVIEGLVIDSELSEAARNKYYKLCCSQNGFLHEDLIKGLNLKL IAGVISETVNIANAIRECSLSTSRDEFATWDKTLRASELFGMNVGFLRERLRQLVGLAFDSEDATKSRRYMEARSERLQNEVEIRNLEAKLVELKAAYER SGCDMTSLKSKAERYELKFQKQVVAPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10031022 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10020016 [exp]	3.5	0.8581
AT2G16860			GCIP-interacting family protei...		Lus10027466 [exp]	9.8	0.8143
AT2G41760			unknown protein		Lus10007544 [exp]	16.4	0.7861
					Lus10007667 [exp]	18.2	0.8219
AT1G53200			unknown protein		Lus10030239 [exp]	19.9	0.8196
AT4G17510		UCH3	ubiquitin C-terminal hydrolase...		Lus10026940 [exp]	21.3	0.8255
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	21.5	0.8389
AT5G09680		RLF	reduced lateral root formation...		Lus10019013 [exp]	23.2	0.7840
AT2G45620			Nucleotidyltransferase family ...		Lus10009310 [exp]	25.5	0.7877
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	26.2	0.8276

Compare expression of checked genes

Lus10031022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.