Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04020 127 / 9e-30 calmodulin binding (.1) AT2G38800 89 / 6e-18 Plant calmodulin-binding protein-related (.1) AT3G54570 67 / 2e-11 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035417 [exp] 1433 / 0 AT5G04020 129 / 3e-30 calmodulin binding (.1) Lus10039544 [exp] 83 / 6e-16 AT3G54570 121 / 9e-29 Plant calmodulin-binding protein-related (.1) Lus10024175 [exp] 82 / 9e-16 AT3G54570 119 / 6e-28 Plant calmodulin-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G041100 [exp] 186 / 4e-48 AT5G04020 114 / 4e-25 calmodulin binding (.1) Potri.006G043900 [exp] 181 / 2e-46 AT5G04020 145 / 6e-35 calmodulin binding (.1) Potri.003G201400 [exp] 92 / 1e-18 AT2G38800 145 / 4e-36 Plant calmodulin-binding protein-related (.1) Potri.001G024100 [exp] 87 / 3e-17 AT2G38800 134 / 2e-32 Plant calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [flax] [poplar] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031023 pacid=23166714 polypeptide=Lus10031023 locus=Lus10031023.g ID=Lus10031023.BGIv1.0 annot-version=v1.0 ATGAGCCCAGACAAGGTTGAATCTGGGAATGCTACAGACTCTGATCAGTTCTCTCTCAACTCTGACACCTTGTCTGTCACCTCAGATCAATCCTCATCCT CATCTTCATCTTCAACGATTCCCCACCAGAAACCACCAAATTACATGAAGACCACCACTTCCTCTGTAGCAAAGAACACCAACGATTCCCAGAGATCAGA AGGAGGCAGTTCCATTAAGCCTGCTAAGGGTTTGGAAAATTCAAAATTCAGGATGAGGAGATCTTTCAGAAGAAGACCAGATTCCAGCATCAAGATAGTT GATAATCCAGCATCAGATGATTATTCATCTTCTTCTGATTCTGAGGGTGATACTAAATCTGATTCCAAAATATCTGTTGCGATGAGAAGAACATCTGGTT CAAGACTAACAAAGGTAGCAAGTTTGAGAATCAGGAGGCAATCCACTGTAGTGAGATCCACTTGTTCCTCAGCTCTCAGAGATTCCAAACTTGCCACCAA TCATGAAGAAAACAACAGCAACTCCAATGAAGGAATTGCAGCCAATAAGGTTTGTCCATATAGCTACTGTTCATTGCACGGACATCACCATTCCAGCAAT CAGGCGCCTACTACATTGAAGCGATTCGTATCGATGAGGCGAAGATTGTTGAAGCCACAGAAGAAGACCAACAACTCATCAGATTCCAGGAAAAAGAAGC TAACAAATCAAACAAAGAAAGGTGTTGTCGTTTCTGAAAATAGTGGGAAAGCTGCTAATGGCGGCAGACAAAAATCTTGTGTTGTTAAGGCAAATGGTGG ATTCTTAGAGACTGATGATAGCTCCGATGTTTTTCAAGATAAGGACTTGGTCGTTTCTGCAGATTATAAGCCTGATGAGGATAGTGGGATTGTACATCTT TCATCTGAAAACTCAATGGAGAAGAATAAGAAGAACATGGGATTATGGGGAGTGATCTACCAGCACATGGCATCAGGCATTGCTGCAGAAGGTGATCAAT CCAGCCAGGCTGAGAAGACCGGAATGGATCGAAACAAAGATCTGGAAGAGGGGAACATAGGAATCAGGAATGTCGATTCGCACCAGCTTGATGCAATCAA GCTTGTCCAGGAAGCATTTGACAAGATCCTCTCAGAAATCCCAGATCCTTTGTCTGATAATCAGTCAGTTGATTATAGTGATGCCGGTTCGGATGCTAGT AGTGCCCCAACTTGTGATGCTTCGCGAAAAGTCAGAATCGAACAAGAACAAATGGAGCTGAAAAAGGCCGAAACTTTCAATGATTCAGAATCAAAGGAGG GAAACAAATCTGCTGCTAAGAAGAAGATCAACGGTTGGAGCAACCTGAAGAAGATTATGATAATGAAGAGATTCGTCAAGGCGATGGATAATGTCAAGAA CTTCAATCTACGTAAGCGTCAACAAGATCATCTTCGGTGTACGGAGCAAGAGGGGGGAGCTGAAAAGGTTAATCTGCGGCCACAGACGATTGGGGAGAAG AAGAACTCAGAGGAATGGATGCTTGATTATGCTCTTCAAAAGGTGATTTCAACACTGGCTCCAGCTCAGAAGAGGAAAGTGGCTCTGATTGTACAAGCAT TCGAAACAGTCGCGCCTCAAGGAGATACTGGCGATCCTGATGCTGCAGCTTCTTCTACTCCCAAAACTCCAGTTCATAACGAACCTGAGCCGGAACAGAA CATAATATTCGGCGTCTTACTTCGAAAAGTATCCACTGTTCCGAAAGAGAGTTGTAATAATGCAGATGGTAGAGATTGCAATGTCGGTGGTTCTGATTTG ATGAAGAGCAGATTGAAGTCAATTGATCAGATTGCTGAAGACAATAGTGTTGATAATGTTACCTTAGATCCTGCAGTAGAAAAAGAAGAAGAACCTCCGA TCGAAGACGTTCAACCATCCATTGAAGCTGAAAATGATGAGGAGCTTGATGTTGATAGAAATGCAGCGGAACCTGAAGCAGAGATGGGGGGGAACCAGAA ACATAAGAATCTGTGGTTTCTGATATACAAGCACATGGTTTCAGGAACAACACAACCACTTCAGGAATCCAGTGAAAAAGTCGAAGGAGGAAGAAACGAG TCCCGGTCACAGATTGAAGCAATAAGGCTTGTAGAGGAGGCGATCGACGAAATTCCTCTTCCGGAGACTCAAGATGATGCACCACCTGCTGCTGATGATC ATCCATCAGCAGCCACCAGAGACATAAATTCCCAAGTAGAAGAGAAACATGGTGAAAGAACAGAGATGAAAACTACAGATGAAGACCAGAAAGAAGAAGC AAGGCCAGCAGCGAAGAAGAGCTGGAGCAATCTGAAGAAGGTGATCTTACTGAAGAGATTCATCAAGTCATTGGAAAAAGTGAACGACACCTGCTTGACT CCGTCGTCGAGAAAGTTCATCAACCCCAAGGAACCCAAGTTTCTTCCTTCGGAGAATGGGCAAGAGGCTGAGAAGGTTTTGCTGAGGCGCCAAGATGTTG GAGACAGGAAAAGTGGTGATGAATGGATGCTTGATCGTGCTCTTCGACAGGTTGTAGCCCAGCTTACACCGGTTCGTCGAAGAAAAGTTGAGCTGCTAGT AGAGGCATTTGAGACTGTCAGTCCCACCATTGGCAACTGA
AA sequence Show only first row Show all	>Lus10031023 pacid=23166714 polypeptide=Lus10031023 locus=Lus10031023.g ID=Lus10031023.BGIv1.0 annot-version=v1.0 MSPDKVESGNATDSDQFSLNSDTLSVTSDQSSSSSSSSTIPHQKPPNYMKTTTSSVAKNTNDSQRSEGGSSIKPAKGLENSKFRMRRSFRRRPDSSIKIV DNPASDDYSSSSDSEGDTKSDSKISVAMRRTSGSRLTKVASLRIRRQSTVVRSTCSSALRDSKLATNHEENNSNSNEGIAANKVCPYSYCSLHGHHHSSN QAPTTLKRFVSMRRRLLKPQKKTNNSSDSRKKKLTNQTKKGVVVSENSGKAANGGRQKSCVVKANGGFLETDDSSDVFQDKDLVVSADYKPDEDSGIVHL SSENSMEKNKKNMGLWGVIYQHMASGIAAEGDQSSQAEKTGMDRNKDLEEGNIGIRNVDSHQLDAIKLVQEAFDKILSEIPDPLSDNQSVDYSDAGSDAS SAPTCDASRKVRIEQEQMELKKAETFNDSESKEGNKSAAKKKINGWSNLKKIMIMKRFVKAMDNVKNFNLRKRQQDHLRCTEQEGGAEKVNLRPQTIGEK KNSEEWMLDYALQKVISTLAPAQKRKVALIVQAFETVAPQGDTGDPDAAASSTPKTPVHNEPEPEQNIIFGVLLRKVSTVPKESCNNADGRDCNVGGSDL MKSRLKSIDQIAEDNSVDNVTLDPAVEKEEEPPIEDVQPSIEAENDEELDVDRNAAEPEAEMGGNQKHKNLWFLIYKHMVSGTTQPLQESSEKVEGGRNE SRSQIEAIRLVEEAIDEIPLPETQDDAPPAADDHPSAATRDINSQVEEKHGERTEMKTTDEDQKEEARPAAKKSWSNLKKVILLKRFIKSLEKVNDTCLT PSSRKFINPKEPKFLPSENGQEAEKVLLRRQDVGDRKSGDEWMLDRALRQVVAQLTPVRRRKVELLVEAFETVSPTIGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04020			calmodulin binding (.1)		Lus10031023 [exp]	0	1
AT5G04020			calmodulin binding (.1)		Lus10035417 [exp]	1.0	0.7587
AT3G62370			heme binding (.1)		Lus10023692 [exp]	9.8	0.6377
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10031963 [exp]	18.2	0.5836
AT5G45840			Leucine-rich repeat protein ki...		Lus10007516 [exp]	18.2	0.6452
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	25.8	0.6272
AT1G77810			Galactosyltransferase family p...		Lus10024750 [exp]	26.6	0.6060
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015476 [exp]	27.6	0.5907
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	34.2	0.6199
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042027 [exp]	50.6	0.5976
AT5G02430			Transducin/WD40 repeat-like su...		Lus10023797 [exp]	50.9	0.6146

Compare expression of checked genes

Lus10031023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.