Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20990 236 / 1e-77 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT1G08080 225 / 2e-73 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT5G04180 203 / 1e-64 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT4G21000 202 / 1e-64 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT1G08065 183 / 6e-57 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT3G52720 181 / 4e-56 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT2G28210 164 / 2e-50 ATACA2 alpha carbonic anhydrase 2 (.1) AT5G56330 148 / 1e-42 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042030 [exp] 267 / 7e-89 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10018017 [exp] 228 / 1e-73 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10018034 [exp] 223 / 8e-72 AT4G20990 248 / 1e-81 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021455 [exp] 214 / 6e-69 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016104 [exp] 212 / 7e-68 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042013 [exp] 212 / 8e-68 AT4G20990 224 / 2e-72 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10023915 [exp] 207 / 5e-66 AT1G08080 275 / 2e-92 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10014412 [exp] 206 / 2e-65 AT1G08080 277 / 2e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 204 / 6e-65 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043700 [exp] 263 / 3e-88 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047400 [exp] 243 / 5e-80 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047500 [exp] 229 / 6e-75 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G121900 [exp] 224 / 8e-73 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.004G212800 [exp] 219 / 5e-71 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.009G010200 [exp] 210 / 2e-67 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G212900 [exp] 186 / 7e-58 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.016G079600 [exp] 176 / 6e-54 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [flax] [poplar] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10031027 pacid=23166876 polypeptide=Lus10031027 locus=Lus10031027.g ID=Lus10031027.BGIv1.0 annot-version=v1.0 ATGATGGACAGCACAAAGTTACTAGTGTTGTTCTTGGTCTCGTATATTGCGGCGTTTTCTCATCTTTCTTCTTCTGCTAAAGATGATCATCAGAGTGAGT TCAGTTACGTGGAAGGAAGCAACAAGGGTCCATCTCAATGGGGGACATTGGATCCAAAGTGGGAAGTTTGCAATAAAGGGAAGTCACAGTCTCCAGTTGA GCTATACCAGACTCTGAAACATGCACCTAAGCTCGGTGCCCTCAATAGATCCTACCATTCTGCTGAAGCTTCCATTGGCACCAATGGACATATTGTCGAG TTAGTTTGGAAAGGAGATGCTGGGGAAATCAAGATTGGTAAGACCAGTTACAAGCTGCTACAATGTCATTGGCATACACCAACTGAGCACTCCGTCTATG GTAAAAGGTTTGACATGGAGCTTCACATGGTCCATAAAACTCGTCATGGATCAACAGCTGTTGTTGCATTCTTGTACGTGTTTGGAGAATCCGACCCATT CCTTTCCAAGCTATTGCCACACATAATTTCACTTGGGAATGTAACCAAGAACTTGAAGAAAGTGAACCCACTGGAGATTGGATTTGGTAGTAATGGACAT TACTACAGATATGATGGGTCTCTCACAACTCCTCCATGCACTGAGGGTGTTACTTGGACTATCTTCCAACAGGTGAAGTCAGTTTCACCATTGCAAGTGC AAGCATTGAAAAATGCAGTTCACACAGGCTTCCAAATGAATGCACGCCCAAGTCAACCATTGAATGGAAGGGTAGTCCATTTGTACAACTAG
AA sequence Show only first row Show all	>Lus10031027 pacid=23166876 polypeptide=Lus10031027 locus=Lus10031027.g ID=Lus10031027.BGIv1.0 annot-version=v1.0 MMDSTKLLVLFLVSYIAAFSHLSSSAKDDHQSEFSYVEGSNKGPSQWGTLDPKWEVCNKGKSQSPVELYQTLKHAPKLGALNRSYHSAEASIGTNGHIVE LVWKGDAGEIKIGKTSYKLLQCHWHTPTEHSVYGKRFDMELHMVHKTRHGSTAVVAFLYVFGESDPFLSKLLPHIISLGNVTKNLKKVNPLEIGFGSNGH YYRYDGSLTTPPCTEGVTWTIFQQVKSVSPLQVQALKNAVHTGFQMNARPSQPLNGRVVHLYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10031027 [exp]	0	1
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028557 [exp]	1.7	0.9864
AT5G26330			Cupredoxin superfamily protein...		Lus10006683 [exp]	1.7	0.9793
AT5G51740			Peptidase family M48 family pr...		Lus10031682 [exp]	2.8	0.9829
AT4G19950			unknown protein		Lus10017130 [exp]	4.1	0.8329
					Lus10033479 [exp]	5.3	0.9631
AT1G65820			microsomal glutathione s-trans...		Lus10020792 [exp]	5.5	0.9451
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10036516 [exp]	6.3	0.9522
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10043176 [exp]	6.3	0.9235
					Lus10015244 [exp]	7.0	0.9448
AT1G07520	GRAS		GRAS family transcription fact...		Lus10037757 [exp]	7.7	0.9058

Compare expression of checked genes

Lus10031027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.