Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19191 726 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 449 / 3e-148 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 419 / 7e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 419 / 1e-135 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 405 / 1e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 393 / 2e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47840 389 / 3e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 386 / 3e-125 MEF22 mitochondrial editing factor 22 (.1) AT3G01580 384 / 1e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49710 383 / 1e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017446 [exp] 460 / 6e-152 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 424 / 2e-138 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10033858 [exp] 410 / 2e-135 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 414 / 5e-132 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 399 / 6e-129 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 398 / 6e-128 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10024936 [exp] 392 / 3e-126 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 390 / 3e-126 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035815 [exp] 388 / 1e-124 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191000 [exp] 456 / 2e-150 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 426 / 3e-139 AT3G22690 582 / 0.0 unknown protein Potri.013G058900 [exp] 430 / 5e-138 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G178200 [exp] 416 / 2e-135 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 410 / 5e-133 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 409 / 1e-132 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G083700 [exp] 409 / 3e-132 AT3G22690 1050 / 0.0 unknown protein Potri.006G181800 [exp] 404 / 8e-131 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 402 / 8e-131 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.004G059400 [exp] 405 / 2e-130 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031028 pacid=23166798 polypeptide=Lus10031028 locus=Lus10031028.g ID=Lus10031028.BGIv1.0 annot-version=v1.0 ATGCGGGTAAGGCTTCATCCCCATTCCCGGCAACTCTCAACCGTAGCTCAAAACCACCCCCCTGTGAACTTCTGGAACTCCCGAATTCGGGATTCCGTGA ATCAGAAAGATGCACACAACGCCATCTCCATCTTCCGAGAGATGAAACGAAACAGAGTTGATCCCGACAATTTCACCTTCCCTTTCGTCGCCAAGGCCTG CGCCAAGCTCTCGAACCTCACTTCTTCCCAGGTTCTCCATGCCCACTTCCTGAAATCGCCTTTTTACTCCGATGTTTACGTGCAGACTTCGTTGCTGGAC TTGTACGTGAAATGTGACCGACTTGACATTGCGCACAACGTGTTCGAGAGAATGCCCCAGAGAGATGTTACGTCGTGGAACGCGATGCTGGTGGGGTTTT CTCAGCTGGGGTTTCCCAATAGAGTGTTCGGGATTTTTAGAGAGATGAGGTTCGCTGGTATGTTGCCTGATTCGGTCACAGTGATGGGTGTTAGCCGGGC TGTGTCGTGTGTGGAGAATTTGGACTTGGCGAAAGGGCTGCATGCTTTTGGGATTCGAATAGGGATAAATTATGACGTTTCTGTTGCGAATACTTGGATA TCTTTGTATGCAAAGTGTGGTAATTTGGGGTTAGCTGAATTGGTTTTTGATGGTATTGAACCTGGGTTGAGGAGTGTGGTTTCGTGGAACTCTATGATTG GAGGGTATGCTAATTCTAAGAGATGTTCTGATGCTTTGAATATGTACCAAAGGTTGATTTTTGACGGATTTAGTGCTGACATAAGTACCATTGTAAGCTT GCTTTCTTCCTGTACGCAACCTGAGGCACTGTGTCAAGGTAGGCTGATTCATTCCCACGGAATTAGATTTGGTTTTGATGTTAATGTTTCTGTTTCCAAT ACGCTTATATCCATGTATTCGAAATGTGGGGACATTGCCTCTGCAAGGTTCTTGTTCGATGGGATGTGTCATAGAAGCTCTGTTTCTTGGACTGCTATGA TTGGTGGATATGCTGAAACAGGAGATCTAGATGAGGTATTGGCATTATTTAAAGCCATGGAAACGACTGGGGAGAAACCTGATATGGTCACTGTACTATC TGTGATTTCAGGCTGCGGTAATGCTGGAATTCTTGAAAGTGGGAGATGGATTCATAATTACGCCAAGCTGATGGGGTTAGAGAATCATGTTTCAGTCAAC AATGCTTTGATAGATATGTATGCAAAGTGTGGAAGCATAAATGACGCTCGAGAGCTATTCTACACCATGCCTGATCGAACTGTGGTATCTTGGACTGCCA TGGTTTCTGGTTGCGCTTTGAATGGATTATTTGAAGAAGCTTTGGATCTTTTCCATCAGATGGTAGAATCTGGTTTGAAGCCAAACAATATAACATTCCT TGCCGTGCTTCAAGCTTGCTCTCATAGTGGCTTTCTGGAAAAAGGTTGGGAGCTCTTCAATCTCATGACCAAAGAATACAACATAAATCCAGGGGTAGAT CATTGTTCTTGCATAGTTGATCTACTTGGACGTGCAGGAAAGCTAAATGAGGCATTGGATTTTGCTATAAATATGCCTGTAAAACCTGATGCTGCTATTT GGAGTGCGCTGTTATGTTATTGCAAGATTCATAACAAAGTTGAGATTGCTGAATATGCAGCCTCTCGCCTCTTTGAGTTGGAGCCTTTTGCTGCAGTTCC ATATGTAGAGATGGCTAACATTTATGCATCTGCTGGAAGGTGGGATAAATTTGCAGGGATTAGAAACTTAATGAAACAAAACAGGCTGAAGAAGTCTCCA GGGAAGAGTTCTGTAGAAGTGAATGGGAAGCCTTTCGAGTTTACTGTTGAAGATAGAGGGCACGTTGAAGGGAAGATGATTTACACTGTTTTGGAAAATC TGATGTTGCAATTAAAAGGAGTGCCCGATCAATGCTCGCTTGGGTTTGAGGAGCTTGAACTCGTCTAG
AA sequence Show only first row Show all	>Lus10031028 pacid=23166798 polypeptide=Lus10031028 locus=Lus10031028.g ID=Lus10031028.BGIv1.0 annot-version=v1.0 MRVRLHPHSRQLSTVAQNHPPVNFWNSRIRDSVNQKDAHNAISIFREMKRNRVDPDNFTFPFVAKACAKLSNLTSSQVLHAHFLKSPFYSDVYVQTSLLD LYVKCDRLDIAHNVFERMPQRDVTSWNAMLVGFSQLGFPNRVFGIFREMRFAGMLPDSVTVMGVSRAVSCVENLDLAKGLHAFGIRIGINYDVSVANTWI SLYAKCGNLGLAELVFDGIEPGLRSVVSWNSMIGGYANSKRCSDALNMYQRLIFDGFSADISTIVSLLSSCTQPEALCQGRLIHSHGIRFGFDVNVSVSN TLISMYSKCGDIASARFLFDGMCHRSSVSWTAMIGGYAETGDLDEVLALFKAMETTGEKPDMVTVLSVISGCGNAGILESGRWIHNYAKLMGLENHVSVN NALIDMYAKCGSINDARELFYTMPDRTVVSWTAMVSGCALNGLFEEALDLFHQMVESGLKPNNITFLAVLQACSHSGFLEKGWELFNLMTKEYNINPGVD HCSCIVDLLGRAGKLNEALDFAINMPVKPDAAIWSALLCYCKIHNKVEIAEYAASRLFELEPFAAVPYVEMANIYASAGRWDKFAGIRNLMKQNRLKKSP GKSSVEVNGKPFEFTVEDRGHVEGKMIYTVLENLMLQLKGVPDQCSLGFEELELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19191			Tetratricopeptide repeat (TPR)...		Lus10031028 [exp]	0	1
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	1.0	0.8416
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022702 [exp]	2.4	0.8295
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	4.9	0.7956
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	5.2	0.8059
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10001852 [exp]	7.3	0.7012
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	8.9	0.7923
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10010853 [exp]	9.2	0.6735
AT4G39530			Tetratricopeptide repeat (TPR)...		Lus10014452 [exp]	9.3	0.7224
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	11.6	0.7798
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	13.3	0.7824

Compare expression of checked genes

Lus10031028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.