Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57180 664 / 0 BPG2 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G10620 426 / 1e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G47450 112 / 1e-25 RIF1, ATNOA1, ATNOS1, NOS1 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G10650 42 / 0.001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035420 [exp] 1054 / 0 AT3G57180 732 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035986 [exp] 422 / 2e-140 AT4G10620 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016692 [exp] 331 / 3e-107 AT4G10620 501 / 1e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000122 [exp] 249 / 8e-78 AT4G10620 346 / 9e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031160 [exp] 117 / 2e-27 AT3G47450 719 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10031736 [exp] 95 / 4e-20 AT3G47450 622 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10031060 [exp] 44 / 0.0004 AT2G41670 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G044700 [exp] 724 / 0 AT3G57180 750 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G010400 [exp] 409 / 6e-135 AT4G10620 695 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G124900 [exp] 121 / 9e-29 AT3G47450 727 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10031030 pacid=23166865 polypeptide=Lus10031030 locus=Lus10031030.g ID=Lus10031030.BGIv1.0 annot-version=v1.0 ATGCACGTTTTACTTTCCACGTCAGCATCCAAGTTCACCAGCTCTAAACTTCTCTACTGGAATCCTTATCCTCAGGAAGTTCCCTCATCCAGAAATTGCC TTTCTCCAGGTTCAGGTTTGAGAGTAGAGAGGAAGAAATGCGAGAGGAGAAGTTTTTCATTTGTAGCCAAAGCCGAAAGCGTTGGTGGTAAGATTGGGGC TAGGAAAGGAATTAGGGAATTAATCTTGAGCGAGGGACGGGACGAGGATGAGAAGCGTGGAGCAATTTGTCCTGGATGTGGGGTGTTTATGCAGGATAGA GAGCAAAACCTTCCTGGCTACTTTCAACCTAGGAGAGTGAGCGTTGAGATAGAGGAAGATTTGGATGGTGAAGATGATGAAGTGGAAGGGTTTGATTGGG ATGAAAAAAAAGAAGAAGAGGAGGAGGAGGAAGGAGAACAGTTGGTTGGCGAGGTTGGAGATGAATTCGAGCAATCGAAGGAGATTGAAGGGGTGAAATG GGACTATGATGAGATTGAAGCATTGTTGAACGATAAAGAGAATGACTTGGATTTGGATGGTTTCACTCTACCGGGTGTTGGGTACGGGAACATCACGGAG GAGGTTATGGAGAAAGAAATGAGGAGGAAGGAGGAGAGGAAGGTGTCGAAAGCTGAGAGGAAAAGGGCGGCTAGGGAGGCTCGGAAGATGGAGAAAGACC ACGAGGTTACGGTATGTGCCAGGTGTCACTCTTTGCGGAATTATGGTCAAGTTAAGAACCAGTCAGCGGAGAATTTGATACCCGATTTCGACTTCAATAG GTTGATTTCGACTAGGTTGATAAAGCCCATAGGAAATGCTAATGCAAGCGTTGTGATTATGGTTGTTGATTGTGTCGACTTTGATGGTTCGTTCCCGAAA CGAGCAGCTAAGTCGTTGTTTGAGGCATTGGAAGGTGTTAAAGCAGCTGACCTTAAACCTAGCAAAAAGATGCCTAAGCTTGTTCTTGTTGCGACAAAGG TTGATCTCCTCCCATCGCAAATATCCCCCGCTAGGTTAGACAGATGGGTAAGGCATCGTGCTAGGGCAGCAGGGGCGCCTAAGTTGGCTGGCGTCTATCT GGTTAGCTCGCGTAAGGATTTGGGTGTGAAGAACTTGTTGTCATTTGTAAAAGAGTTGGCTGGTCCTCGAGGGAATGTATGGGTTATTGGAGCTCAGAAC GCTGGTAAATCCACACTGATCAATGCACTTGCGAAGAAAGAAGGCGCCAAAGTAACGAAGCTCACGGAGGCTCCGGTTCCTGGTACCACTCTTGGGATCT TGAGAATAGAGGGCATTTTGTCTGCCAAAGCAAAGATGTACGATACTCCGGGACTTCTACATCCAAATCTTTTGTCAATGAGGTTGAACAGGGATGAACA GAAAATGGTCGAGATACGTAAGGAGTTGAAACCTCGATCGTATAGGGTGAAAGCTGGTACTGCAATTCACCTCGGAGGACTGGCGAGACTGGACCTTATT CAAGCTTCTGTAGAGACAATTTATATCACAGTTTGGGCATCGCCGAGCATTTCTCTCCACATGGGAAAGTTGGAAACTGCCGACGAATTCTACAATAACC ATGTCGGTATTCGGTTGCAGCCCCCAGTGGGGAGGGAACGAGCCGACGAGCTGGGGGAATGGGTAGCGAGAGAAATCAAGGTGACCGGAAGCAGCTGGGA CGTGAACAGCATCGACATCTCGATAGCTGGGTTGGGTTGGTTTTCAGTGGGTCTTAAAGGCGAAGCGACACTGACTTTAAGAACGTACGACTCTGTCGAA ATCACGCTTAGAGATCCACTAGTTCTGGACCGAGCAACGTTCCTGGAGAGGCCCGGGTTCTGGCTACCTCAGGCTCTATCTGACGCACTTGGCAACGAGA AGAAGCTTGAAGCTAAGAAGAAGAAGAAACAGGCTGAAGATTACGAGGAAAGCCTCGAACTTTACTCGGAGTTGGCTGCTTGA
AA sequence Show only first row Show all	>Lus10031030 pacid=23166865 polypeptide=Lus10031030 locus=Lus10031030.g ID=Lus10031030.BGIv1.0 annot-version=v1.0 MHVLLSTSASKFTSSKLLYWNPYPQEVPSSRNCLSPGSGLRVERKKCERRSFSFVAKAESVGGKIGARKGIRELILSEGRDEDEKRGAICPGCGVFMQDR EQNLPGYFQPRRVSVEIEEDLDGEDDEVEGFDWDEKKEEEEEEEGEQLVGEVGDEFEQSKEIEGVKWDYDEIEALLNDKENDLDLDGFTLPGVGYGNITE EVMEKEMRRKEERKVSKAERKRAAREARKMEKDHEVTVCARCHSLRNYGQVKNQSAENLIPDFDFNRLISTRLIKPIGNANASVVIMVVDCVDFDGSFPK RAAKSLFEALEGVKAADLKPSKKMPKLVLVATKVDLLPSQISPARLDRWVRHRARAAGAPKLAGVYLVSSRKDLGVKNLLSFVKELAGPRGNVWVIGAQN AGKSTLINALAKKEGAKVTKLTEAPVPGTTLGILRIEGILSAKAKMYDTPGLLHPNLLSMRLNRDEQKMVEIRKELKPRSYRVKAGTAIHLGGLARLDLI QASVETIYITVWASPSISLHMGKLETADEFYNNHVGIRLQPPVGRERADELGEWVAREIKVTGSSWDVNSIDISIAGLGWFSVGLKGEATLTLRTYDSVE ITLRDPLVLDRATFLERPGFWLPQALSDALGNEKKLEAKKKKKQAEDYEESLELYSELAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10031030 [exp]	0	1
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013857 [exp]	14.4	0.7577
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10041104 [exp]	22.2	0.6991
AT5G24314		PDE225, PTAC7	PIGMENT DEFECTIVE 225, plastid...		Lus10041454 [exp]	22.9	0.7647
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	25.2	0.7570
AT1G67440		EMB1688	embryo defective 1688, Minichr...		Lus10015794 [exp]	35.1	0.7357
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10023640 [exp]	42.1	0.7145
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10022002 [exp]	42.5	0.7301
AT4G24090			unknown protein		Lus10017325 [exp]	42.9	0.7429
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Lus10034152 [exp]	46.2	0.7104
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10043235 [exp]	48.2	0.7373

Compare expression of checked genes

Lus10031030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.