Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04010 99 / 3e-24 F-box family protein (.1) AT4G24210 40 / 0.0003 SLY1 SLEEPY1, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035421 [exp] 330 / 2e-114 AT5G04010 58 / 1e-09 F-box family protein (.1) Lus10013309 [exp] 43 / 0.0002 AT2G27310 247 / 4e-80 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G044801 [exp] 155 / 6e-46 AT5G04010 114 / 8e-30 F-box family protein (.1) Potri.004G076800 [exp] 139 / 3e-39 AT5G04010 122 / 9e-33 F-box family protein (.1) Potri.004G077301 [exp] 71 / 2e-14 AT5G04010 54 / 9e-09 F-box family protein (.1) Potri.009G160700 [exp] 41 / 0.0007 AT2G27310 221 / 9e-70 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031031 pacid=23166743 polypeptide=Lus10031031 locus=Lus10031031.g ID=Lus10031031.BGIv1.0 annot-version=v1.0 ATGTCGATGCCAACACATGATCATCGTGATCAAAACTTACACCACGCGCCACCGCCATGGGAGGTGCAAACCCTACTCTCCAACACCCTCGACGCCAAAA CGCTAGCCACTGCCGCCTGCGTATCAAAATCCTGGAGAGACGCCACGTCATCCGACCACATCTGGCAAAAACTCGCAAGCTCCCACTTCCCTTCCTTAAC CTCCACTCTCAAGGCATTCGTCCAACCTCCTCTGCCTTACCGTCGCATATACGCCCTGGCCCACTCCGCTGCCGCCAAACGCAGCCGCCTCATGATGATA AAACCTGAATACTCCCTCCCTAAGCCTTCACTCTCCCTCCACCACATCATCTTCGCATTCGACATCCAAACCGGGTTCCACCGCGTTTCCTTCTCCGGTC CTGCGGAGGAGGTGGCTGTATTTGACTCCAACGACGTGTTCCGGTTTGACGTTGACCTCGACCTCGTGGCGGGGGAGGAGGTGAGGATGACGTGGCATGC GGTTGTGAGGGACGACGATAAGAGGAACGCGGCGGCACCGTCGGTGTTGACTTTGATGGATGGTAGTGTTGTGAAGGTGAGGAAGGAGGCGGGTGGGGAG GCGGTTGGGTGGTTGTCAGAGGAGCTTCCGCAGCCGCCAGGGTGTTGTTGCTGTAATAGTAATGAGGGGGCGTGGAGTCGGATGGTGGCGGATTTGAAGA TGGGATTTTGTGGTGGGGAAGAGGCGACGAGGGTTGAGAAGGTGAGTTTGGGGTTGTTGAGTACTGAAAAATGGAGGTATGTTAGCGTGGACGATGGGCT TAGGTACTTGCAGCACTTTCTATTGGACAAGTGA
AA sequence Show only first row Show all	>Lus10031031 pacid=23166743 polypeptide=Lus10031031 locus=Lus10031031.g ID=Lus10031031.BGIv1.0 annot-version=v1.0 MSMPTHDHRDQNLHHAPPPWEVQTLLSNTLDAKTLATAACVSKSWRDATSSDHIWQKLASSHFPSLTSTLKAFVQPPLPYRRIYALAHSAAAKRSRLMMI KPEYSLPKPSLSLHHIIFAFDIQTGFHRVSFSGPAEEVAVFDSNDVFRFDVDLDLVAGEEVRMTWHAVVRDDDKRNAAAPSVLTLMDGSVVKVRKEAGGE AVGWLSEELPQPPGCCCCNSNEGAWSRMVADLKMGFCGGEEATRVEKVSLGLLSTEKWRYVSVDDGLRYLQHFLLDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04010			F-box family protein (.1)		Lus10031031 [exp]	0	1
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	4.0	0.8161
AT5G55690	MADS		MADS-box transcription factor ...		Lus10014095 [exp]	5.9	0.8249
AT5G41720			unknown protein		Lus10006473 [exp]	6.2	0.7967
AT4G09940			P-loop containing nucleoside t...		Lus10028023 [exp]	8.5	0.7440
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10035566 [exp]	9.2	0.7888
AT2G41480			Peroxidase superfamily protein...		Lus10007052 [exp]	10.4	0.7742
AT4G37710			VQ motif-containing protein (....		Lus10019270 [exp]	15.9	0.7558
					Lus10034718 [exp]	19.0	0.7925
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10035663 [exp]	19.6	0.7679
AT1G32920			unknown protein		Lus10001526 [exp]	20.7	0.7708

Compare expression of checked genes

Lus10031031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.