Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57270 149 / 8e-44 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT5G56590 140 / 4e-39 O-Glycosyl hydrolases family 17 protein (.1) AT3G57240 131 / 5e-37 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57260 124 / 2e-34 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT1G77780 123 / 9e-34 Glycosyl hydrolase superfamily protein (.1) AT2G01630 119 / 6e-32 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G16260 115 / 4e-31 Glycosyl hydrolase superfamily protein (.1) AT2G27500 112 / 6e-30 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G11820 113 / 8e-30 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G24318 112 / 2e-29 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035423 [exp] 342 / 1e-119 AT3G57270 266 / 3e-87 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10031037 [exp] 209 / 5e-67 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10031035 [exp] 196 / 4e-62 AT3G57260 218 / 1e-68 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10031036 [exp] 148 / 4e-44 AT3G57270 210 / 3e-66 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10019800 [exp] 133 / 9e-39 AT3G57270 238 / 1e-77 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014110 [exp] 134 / 2e-38 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027479 [exp] 131 / 1e-37 AT4G16260 216 / 8e-69 Glycosyl hydrolase superfamily protein (.1) Lus10012937 [exp] 132 / 2e-36 AT5G56590 617 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039233 [exp] 129 / 3e-36 AT4G16260 258 / 5e-84 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172000 [exp] 142 / 4e-41 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.002G089200 [exp] 140 / 2e-40 AT1G77780 309 / 6e-104 Glycosyl hydrolase superfamily protein (.1) Potri.006G048100 [exp] 138 / 1e-39 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.001G255100 [exp] 136 / 5e-39 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.016G057400 [exp] 133 / 7e-38 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 131 / 7e-37 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 128 / 9e-36 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.018G068600 [exp] 128 / 9e-35 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184100 [exp] 119 / 2e-32 AT2G16230 362 / 1e-122 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184300 [exp] 120 / 3e-32 AT2G16230 511 / 1e-179 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10031033 pacid=23166871 polypeptide=Lus10031033 locus=Lus10031033.g ID=Lus10031033.BGIv1.0 annot-version=v1.0 ATGCAGAGATCGATCACCGCCATCGGATTAAACTACAGAAAAGTCTCCACTACCATCAGGTACTCACTGAAAAAGTCGTTCCCTCCTTCCAAAGGCGCAT TCACCGCCGAAGTGGACGTCCTGATGAGACCGTTGGTGAAGGTATTAAAGCGTAACGGAGCGCCGTTGATGGTTAACTCGCACCCTTACTACGGCACACC GCGTGAGTACGTGTTCTTCGGGGAAGGGTATGAAGGGGTGAAGGACGGAGAGTATAGGTACACGAACATGTTTGACGCTCAGGTGGACGCGATGTACGCG GCGCTGGAGAGGTACGAGGGCGGCGAGGCGGTGAAGGTGGTGGTGGCGGAGACGGGGTGGCCGACGGCGGGGGATCTTGACGGGATGGCGTCGGTAGAGA ATGCCAAGGAGTTTAACGGGAATTTGGCGAAGCATGTGAAATTAGGGACGCCGAGGAGGCCCGGGGAGGAGATAGAGACTTACGTTTTTGAGTTGTTTAA TGAGAATATGAAGACACCCGTTGGGACTGAGAACTGTTGGGGGGTTTTCTATGCCGACATGACTCCGGTTTATCCTATGACTTTCCAGTGA
AA sequence Show only first row Show all	>Lus10031033 pacid=23166871 polypeptide=Lus10031033 locus=Lus10031033.g ID=Lus10031033.BGIv1.0 annot-version=v1.0 MQRSITAIGLNYRKVSTTIRYSLKKSFPPSKGAFTAEVDVLMRPLVKVLKRNGAPLMVNSHPYYGTPREYVFFGEGYEGVKDGEYRYTNMFDAQVDAMYA ALERYEGGEAVKVVVAETGWPTAGDLDGMASVENAKEFNGNLAKHVKLGTPRRPGEEIETYVFELFNENMKTPVGTENCWGVFYADMTPVYPMTFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	0	1
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	1.0	1.0000
AT1G70780			unknown protein		Lus10039287 [exp]	1.4	1.0000
					Lus10027606 [exp]	2.4	0.9842
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	2.6	0.9067
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	2.8	0.9713
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	3.2	0.9279
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	3.5	0.9262
AT4G39830			Cupredoxin superfamily protein...		Lus10000871 [exp]	3.5	0.8337
AT5G24130			unknown protein		Lus10001061 [exp]	4.0	0.8848
AT1G30710			FAD-binding Berberine family p...		Lus10023369 [exp]	4.2	0.8552

Compare expression of checked genes

Lus10031033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.