Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57260 218 / 1e-68 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT3G57270 217 / 3e-68 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57240 204 / 2e-63 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT1G77780 196 / 6e-60 Glycosyl hydrolase superfamily protein (.1) AT5G20390 192 / 7e-59 Glycosyl hydrolase superfamily protein (.1) AT4G16260 190 / 8e-58 Glycosyl hydrolase superfamily protein (.1) AT5G20340 188 / 6e-57 BG5 beta-1,3-glucanase 5 (.1) AT5G56590 189 / 6e-56 O-Glycosyl hydrolases family 17 protein (.1) AT1G77790 182 / 8e-55 Glycosyl hydrolase superfamily protein (.1) AT4G26830 181 / 2e-53 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031036 [exp] 457 / 3e-163 AT3G57270 210 / 3e-66 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10031037 [exp] 365 / 4e-126 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10035423 [exp] 318 / 5e-108 AT3G57270 266 / 3e-87 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014110 [exp] 236 / 3e-76 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10002807 [exp] 220 / 2e-69 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10019801 [exp] 219 / 3e-69 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10031033 [exp] 214 / 3e-69 AT3G57270 167 / 1e-50 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 217 / 2e-68 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027860 [exp] 216 / 6e-68 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G255100 [exp] 228 / 7e-73 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 229 / 1e-72 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.006G048100 [exp] 221 / 8e-70 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.002G089200 [exp] 220 / 1e-69 AT1G77780 309 / 6e-104 Glycosyl hydrolase superfamily protein (.1) Potri.016G057400 [exp] 220 / 1e-69 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 216 / 6e-68 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 215 / 1e-67 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.009G050300 [exp] 201 / 2e-62 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.010G088500 [exp] 189 / 2e-57 AT1G77780 224 / 9e-71 Glycosyl hydrolase superfamily protein (.1) Potri.018G068600 [exp] 189 / 4e-56 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10031035 pacid=23166831 polypeptide=Lus10031035 locus=Lus10031035.g ID=Lus10031035.BGIv1.0 annot-version=v1.0 ATGTTTAATGTCGATGCTTGCAGATGCGGCCATCGGTGTGTGTTATGGAAACAAAGGCGACAACCTCCCATCAGTACAAGAAGTAATATCACTCTACCAA AAATACAACATCACCACGATACGGATATACGATCCGAACCGGAAGTCCTCCGAGCCCTACAAGGTACCAACATCCAACTCTCCCTTGACATCACTGCAGA CAACATCCCAAACCTTGCCTCGAGCCAAGCCGCTGCCGACTCATACATCTGTGACCACATCCAACCCTACATCGGAGGTGTCAAGCTCCGTTACATAGCT ATCGGGAACGAGGTCGAGCCCGGCCAACCGTCGTTCCAGTACATCGTCCTAGCGATCGAGAACATCCAGAGATCTATTTCCGCCATCGGCTTCAACGACA CAAAAGTCACCACCTGCTTCAAGTACAACCTGAATAAGACCATCCCTCCCTCAGCAGGCTCCTTTTCCCTGGAATCCGAGTCCGTCTTGAGACCGTTAGT CAACGTCTTGAAAACTAACGGAGCACAGTATATGGTCAATGTATACCCGTTCTTCGCCTACCATAAGGACCCACAAAAGGTAGGAATAAGGGAATTTGCG CTTTTCATGTCCAAGTCACCTGTGATGAGGGACGGGGAGTACGAGTATAGTAATCTATTCGATGCCACCGTGGACGCAGTTTACTCGGCGTTGGAGAAGT ACGGCGGGGCATCGGTGAAGGTGGTCGTTCCGGAGACCGGGTGGGCGACGGTCGGGGAATTGGCGGAAGTGACTTCGGTGGAGAATGCGAGGCTTTATAA TAGTAACTTGGTGAAGCATGTGTATGGAGGGAAAGGTACGCCGAAGAGGGCAGGGGAGGAGATCGAGGCGTATATTTTCGAGTTGTTTAACGAGAATCAG AAATCGGTTGGGATCGAGAGCAATTTTGGGTTGTTCTATCCGGACCAAAGGCCTGTTTACCCTATGAGTTTCTTGTAA
AA sequence Show only first row Show all	>Lus10031035 pacid=23166831 polypeptide=Lus10031035 locus=Lus10031035.g ID=Lus10031035.BGIv1.0 annot-version=v1.0 MFNVDACRCGHRCVLWKQRRQPPISTRSNITLPKIQHHHDTDIRSEPEVLRALQGTNIQLSLDITADNIPNLASSQAAADSYICDHIQPYIGGVKLRYIA IGNEVEPGQPSFQYIVLAIENIQRSISAIGFNDTKVTTCFKYNLNKTIPPSAGSFSLESESVLRPLVNVLKTNGAQYMVNVYPFFAYHKDPQKVGIREFA LFMSKSPVMRDGEYEYSNLFDATVDAVYSALEKYGGASVKVVVPETGWATVGELAEVTSVENARLYNSNLVKHVYGGKGTPKRAGEEIEAYIFELFNENQ KSVGIESNFGLFYPDQRPVYPMSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10031035 [exp]	0	1

Compare expression of checked genes

Lus10031035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.