Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32170 528 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G32160 461 / 4e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035424 [exp] 513 / 0 AT2G32170 485 / 4e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G023400 [exp] 572 / 0 AT2G32170 648 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.016G021900 [exp] 556 / 0 AT2G32170 616 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.016G021400 [exp] 517 / 0 AT2G32170 553 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07942 [flax] [poplar] N2227 N2227-like protein
Representative CDS sequence Show only first row Show all	>Lus10031038 pacid=23166830 polypeptide=Lus10031038 locus=Lus10031038.g ID=Lus10031038.BGIv1.0 annot-version=v1.0 ATGTTCGATGAAAGAGCAGGCGGAGCCGTCGACGACGATGAGCGCCGCCGTCAAAAGAAGCTAGAAGAGGCTCTCGAGGTCCAATCCCTCCGCCGTATTA TCACCGCTTATTTAAACTATCCTGAAGCTGCAGAGGATGATGTCAAAAGATATGAAAGGTCCTATAGAAAGCTTTCACCTGCGCACAAGGAGTTTGAGCC TCCTCTAGATATGAGCCAGGATGTGGATTGTTGTGACGATTTGCATGCTGAGGAAGCATCAGATCATTGTTGTCCATCAAAACAGAGGAATTGTTGCAGT TCACCTGCTCTGGCCGGTAGTGGAACTATTTGTTGTTCCATTCCTGAAGAGGCCTGTCGTGAAGAAGGAAGCCATATGCATAAGATGTCAACTGGGGTGA CTACTACTGAGGAAACCGCAATTGGAGGTTCCCATGACTCTCCTGTGGTAAATGGCCAAGATGGTGCGGAAAATGGAACATCGACACTACAGCAGGAATC TGACTTCCCGGAATGCAATGGAAATGACACCTCGCATGATTGCTCAGATCCATCAATTCAGTTTAATGTTCCCCTTGTTGATGTTGATAAGGTCCGCTGT ATAGTGAGAAATATAGTTAGAGACTGGGCAGCAGAGGGACAAAAAGAACGAGATGAATGTTACAAACCTATTCTTGAAGAGCTAGATTCTCAATTTCCAA ATCGTTCTAGGGAGCGTGCTCCTGCTTGTTTGGTACCTGGTGCTGGACTCGGGCGACTAGCATTGGAGATATCACGCTTGGGTTTCGCGAGCCAAGGAAA TGAATTTTCGTACTACATGATGATATGCTCGAGTTTCATTCTTAACCACGCTGAAACTGTTGGGGAGTGGACGATATATCCATGGATCCATAGCAACTGT AACTCGCTTTCGGATAGTGATCAACTTCGTCCCGTGTCGATACCAGATATTCATCCAGCAAGTGCAGGGATTACGGAAGGATTTTCCATGTGCGGGGGTG ACTTTGTCGAAGTCTATTCTGATCCAAGTCAAGAAGGATGCTGGGATGCAGTTGTGACCTGTTTCTTCATTGATACAGCACACAACATTATAGAGTATAT CGAAACCATATCAAAGATTCTGAAAGATGGAGGAGTATGGATCAACTTGGGTCCCTTGCTGTACCATTTTGCAGACATGTACGGGCAAGAAGATGAGATG TCTATTGAACTTAGCTTGGAGGATGTGAAACGAGTCGCCCTGCATTACGGGTTTGAGTTTGAGGATGTCAGATGCTTTAAACATTCTGGTACGCTTCTTT CTGCTGCAGAACCATTACTTTGCTGCATTTTGGACAGCGAGAAAAGTTTCGAAAACTACGTAGAAGCAGTCGATGATCATGTAGCTATCGCGGGTCATGT AAACCATAAACCATTGCGGTTTTATCTATATTCTTACCTGGCTGAAGACTGA
AA sequence Show only first row Show all	>Lus10031038 pacid=23166830 polypeptide=Lus10031038 locus=Lus10031038.g ID=Lus10031038.BGIv1.0 annot-version=v1.0 MFDERAGGAVDDDERRRQKKLEEALEVQSLRRIITAYLNYPEAAEDDVKRYERSYRKLSPAHKEFEPPLDMSQDVDCCDDLHAEEASDHCCPSKQRNCCS SPALAGSGTICCSIPEEACREEGSHMHKMSTGVTTTEETAIGGSHDSPVVNGQDGAENGTSTLQQESDFPECNGNDTSHDCSDPSIQFNVPLVDVDKVRC IVRNIVRDWAAEGQKERDECYKPILEELDSQFPNRSRERAPACLVPGAGLGRLALEISRLGFASQGNEFSYYMMICSSFILNHAETVGEWTIYPWIHSNC NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQEGCWDAVVTCFFIDTAHNIIEYIETISKILKDGGVWINLGPLLYHFADMYGQEDEM SIELSLEDVKRVALHYGFEFEDVRCFKHSGTLLSAAEPLLCCILDSEKSFENYVEAVDDHVAIAGHVNHKPLRFYLYSYLAED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32170			S-adenosyl-L-methionine-depend...		Lus10031038 [exp]	0	1
AT5G19300			unknown protein		Lus10034063 [exp]	8.2	0.8988
AT3G04600			Nucleotidylyl transferase supe...		Lus10026754 [exp]	12.1	0.9073
AT2G18850			SET domain-containing protein ...		Lus10006953 [exp]	19.0	0.8882
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10019634 [exp]	21.4	0.8918
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10042240 [exp]	24.2	0.8825
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	27.4	0.8979
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10027922 [exp]	29.1	0.8855
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007385 [exp]	31.0	0.8953
AT3G59820			LETM1-like protein (.1.2)		Lus10025602 [exp]	36.0	0.8866
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10006407 [exp]	40.0	0.8364

Compare expression of checked genes

Lus10031038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.