Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10150 414 / 4e-144 ATPAP16, PAP16 purple acid phosphatase 16 (.1) AT5G57140 77 / 3e-15 ATPAP28, PAP28 purple acid phosphatase 28 (.1) AT5G63140 75 / 2e-14 ATPAP29, PAP29 purple acid phosphatase 29 (.1) AT2G46880 59 / 1e-09 ATPAP14, PAP14 purple acid phosphatase 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018030 [exp] 426 / 8e-149 AT3G10150 492 / 5e-175 purple acid phosphatase 16 (.1) Lus10005170 [exp] 164 / 4e-50 AT3G10150 59 / 3e-11 purple acid phosphatase 16 (.1) Lus10042026 [exp] 129 / 3e-35 AT3G10150 150 / 1e-43 purple acid phosphatase 16 (.1) Lus10009863 [exp] 70 / 7e-13 AT5G63140 503 / 2e-179 purple acid phosphatase 29 (.1) Lus10022947 [exp] 70 / 8e-13 AT5G57140 538 / 0.0 purple acid phosphatase 28 (.1) Lus10027596 [exp] 69 / 1e-12 AT5G57140 540 / 0.0 purple acid phosphatase 28 (.1) Lus10010289 [exp] 66 / 2e-11 AT5G63140 491 / 2e-174 purple acid phosphatase 29 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G042500 [exp] 438 / 3e-153 AT3G10150 521 / 0.0 purple acid phosphatase 16 (.1) Potri.014G109100 [exp] 83 / 2e-17 AT5G63140 520 / 0.0 purple acid phosphatase 29 (.1) Potri.006G074300 [exp] 81 / 2e-16 AT5G57140 514 / 0.0 purple acid phosphatase 28 (.1) Potri.002G183000 [exp] 77 / 2e-15 AT5G63140 521 / 0.0 purple acid phosphatase 29 (.1) Potri.002G183200 [exp] 76 / 8e-15 AT5G63140 515 / 0.0 purple acid phosphatase 29 (.1) Potri.006G074500 [exp] 65 / 3e-11 AT5G57140 485 / 2e-171 purple acid phosphatase 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10031039 pacid=23166766 polypeptide=Lus10031039 locus=Lus10031039.g ID=Lus10031039.BGIv1.0 annot-version=v1.0 ATGGCTCGCCGGGAATGGGATTCAGTTCACTGCCGGACATGGATCGTCGTGCTCTTTGCTGCGTTCCTCTGCAGCAGCAGCAGCACTGCTAAGTTTCACC ACCCGCGTATTGCCCGAGCTCAGCGGCAGCAAATAACCAAGACACTCCGTATCCCCGCCGGTAAACCTTCCTTCAAAATCGCCATGTTCGCCGACCTCCA CTTCGGCGAGAACGCCTGGACCGATTGGGGCCCTCTCCAGGACGTCCTCTCCACCTCACTCATCTCCACCGTCCTCGACACCGAAAAACCAGATTTCGCG GTTTACTTGGGGGACGTGATCACTGCCAACAACATCGCGATCGCCAACGCGAGTGCCTACTGGGACCAGGCGATTTCACCGGCGCGAGACCGGAGGATAC CGTGGGCGACAGTGTTCGGGAACCACGACGACGCGAAATTCGAGTGGCCGGCGGAGTGGTTCTCGTCCGGGATCCCTGAGATTCGATGCCCGGCGGGAGG AGCTGACTGTAGCTTCAAGGGAACGGGAAGGGTGGAGCTGATGAAGAAAGAGGTTGACAAGGACGGGAAGGGGATGTCGTTTTCAGGGAGCGGTCCGGCT TCTCTGTGGCCGAGTGTGTCCAATTACGTGATACCCGTGGGTTCATCCGGCGTAGGTTCGCCGCCGGTTCTGTTGATGTATTTTCTGGATTCCGGTGGCG GTTCGTATCCCGGCGTTATATCTACGGCGCAGTCGGCTTGGCTTCAGGGCAAGTTCCGAGAGCTGAATCCTGATTCCAGGATACCGGAGATAGTGTTCTG GCACATACCAAGTCGAGCATACTCCACTGTGGCACCGACCAGAGGAGGAGTGGCGAGTCCTTGTGTAGGTTCAATCAACGAGGAAAGCGTCGCCCCTCAA GACCAAGAAATCGGCACCATGGACATCCTTTCGAAGAGAACTTCCGCAGTGTTTGTAGGGCATAATCACGGGCTAGACTGGTGCTGCCCGTACCAAAACA GGTTGTGGTTGTGCTACGCAAGGCACAGTGGGTACGGTGGATATGGAAGTTGGGCAAGAGGAGTTAGAATGGTGGAAGTCACTGAGAAGCCCTTCTCTGT TAAGTCATGGATCACAATGGATGATGGCACATCACACAGTCAAATTACACTCTCTTCCTAG
AA sequence Show only first row Show all	>Lus10031039 pacid=23166766 polypeptide=Lus10031039 locus=Lus10031039.g ID=Lus10031039.BGIv1.0 annot-version=v1.0 MARREWDSVHCRTWIVVLFAAFLCSSSSTAKFHHPRIARAQRQQITKTLRIPAGKPSFKIAMFADLHFGENAWTDWGPLQDVLSTSLISTVLDTEKPDFA VYLGDVITANNIAIANASAYWDQAISPARDRRIPWATVFGNHDDAKFEWPAEWFSSGIPEIRCPAGGADCSFKGTGRVELMKKEVDKDGKGMSFSGSGPA SLWPSVSNYVIPVGSSGVGSPPVLLMYFLDSGGGSYPGVISTAQSAWLQGKFRELNPDSRIPEIVFWHIPSRAYSTVAPTRGGVASPCVGSINEESVAPQ DQEIGTMDILSKRTSAVFVGHNHGLDWCCPYQNRLWLCYARHSGYGGYGSWARGVRMVEVTEKPFSVKSWITMDDGTSHSQITLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10031039 [exp]	0	1
AT2G25760			Protein kinase family protein ...		Lus10025827 [exp]	1.4	0.8642
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10035020 [exp]	5.7	0.8140
AT5G57710			Double Clp-N motif-containing ...		Lus10019984 [exp]	6.0	0.8192
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	7.3	0.8437
AT5G42200			RING/U-box superfamily protein...		Lus10034551 [exp]	10.1	0.8230
AT5G63180			Pectin lyase-like superfamily ...		Lus10013668 [exp]	18.3	0.8079
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10041260 [exp]	18.4	0.7933
AT5G48220			Aldolase-type TIM barrel famil...		Lus10001179 [exp]	19.1	0.8097
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	24.6	0.8161
AT3G62060			Pectinacetylesterase family pr...		Lus10038024 [exp]	25.0	0.8097

Compare expression of checked genes

Lus10031039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.