Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G30495 201 / 6e-66 Fcf2 pre-rRNA processing protein (.1.2) AT1G54770 183 / 4e-59 Fcf2 pre-rRNA processing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035425 [exp] 374 / 5e-134 AT5G30495 198 / 7e-65 Fcf2 pre-rRNA processing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G206400 [exp] 275 / 6e-95 AT5G30495 211 / 4e-70 Fcf2 pre-rRNA processing protein (.1.2) Potri.010G002100 [exp] 264 / 8e-91 AT5G30495 216 / 6e-72 Fcf2 pre-rRNA processing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08698 [flax] [poplar] Fcf2 Fcf2 pre-rRNA processing
Representative CDS sequence Show only first row Show all	>Lus10031040 pacid=23166862 polypeptide=Lus10031040 locus=Lus10031040.g ID=Lus10031040.BGIv1.0 annot-version=v1.0 ATGAGCGAAGGAGGAGAGGGAAAGGCTGTGATAGGGCTCTCATGGCAGCCTAAGTTGATTATGCCGTCGTCTGCTTCGTCATCTCACAACCCTACTCCAG ATCAGTCTGGTGGTTCTCTTTGGAAGCCTGCCCAGCAGCTTGTAGATGGATTGTACTTGCCCCCCAATAATCCTGCTAAGTTGAATAAACTACAGAGGAA GCAGGTCAATGATACCCTTGGAAAGGACTGGTTTGATATGCCAGCTCCAACTATCACACCTGAATTAAAGAAAGATCTCCAGATACTCAAGCTAAGGGGT GCTATAGACCCAAAAAGGCACTACAAGAAAGGAGGTTCCAAAGCTCTTCCAAAGTACTTTCAGGTGGGCACAGTCATTGAGTCTTCAATGGAGTACTTCT CTGGTAGGCTGACAAAGAAGGAGAGGAAAGCAACTCTTGCAGATGAGCTTCTTGCCGATCAGAACTTCAAAACTTACAGGAAGCGAAAGGTTAGAGAGAT CGAAGAACAGAACCGTCCTGGTGGGAAAGATAAATGGAAGATAAGGGGGAAAGAGTCGTTGAAGCGAGCAAAGGAAAAAAGGCGTTAA
AA sequence Show only first row Show all	>Lus10031040 pacid=23166862 polypeptide=Lus10031040 locus=Lus10031040.g ID=Lus10031040.BGIv1.0 annot-version=v1.0 MSEGGEGKAVIGLSWQPKLIMPSSASSSHNPTPDQSGGSLWKPAQQLVDGLYLPPNNPAKLNKLQRKQVNDTLGKDWFDMPAPTITPELKKDLQILKLRG AIDPKRHYKKGGSKALPKYFQVGTVIESSMEYFSGRLTKKERKATLADELLADQNFKTYRKRKVREIEEQNRPGGKDKWKIRGKESLKRAKEKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G30495			Fcf2 pre-rRNA processing prote...		Lus10031040 [exp]	0	1
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10039497 [exp]	7.7	0.9093
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	11.4	0.9146
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10033666 [exp]	13.1	0.9065
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10014792 [exp]	17.3	0.8992
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10009249 [exp]	21.0	0.9015
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10021978 [exp]	28.2	0.9048
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	29.4	0.9052
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10010685 [exp]	33.7	0.9038
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10015841 [exp]	39.3	0.9043
AT2G28600			P-loop containing nucleoside t...		Lus10043421 [exp]	43.9	0.9023

Compare expression of checked genes

Lus10031040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.