Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41520 489 / 2e-154 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT5G12430 436 / 5e-134 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT1G78120 90 / 4e-18 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G58620 89 / 9e-18 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G53300 86 / 9e-17 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT2G42580 86 / 1e-16 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT5G10090 77 / 3e-14 TPR13 tetratricopeptide repeat 13, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65160 76 / 7e-14 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT3G62570 73 / 6e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G14950 72 / 2e-12 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035427 [exp] 1645 / 0 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10005022 [exp] 415 / 1e-125 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10019041 [exp] 410 / 5e-124 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10028154 [exp] 82 / 1e-15 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10018179 [exp] 65 / 2e-10 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 65 / 2e-10 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10002438 [exp] 64 / 6e-10 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10042854 [exp] 61 / 6e-09 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10018004 [exp] 59 / 1e-08 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G047700 [exp] 677 / 0 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.016G043900 [exp] 647 / 0 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.009G050200 [exp] 474 / 6e-147 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G255000 [exp] 437 / 5e-133 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.005G166300 [exp] 95 / 2e-19 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G076800 [exp] 88 / 2e-17 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 86 / 8e-17 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G111500 [exp] 83 / 7e-16 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.007G091200 [exp] 80 / 6e-15 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.018G100700 [exp] 66 / 2e-11 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10031042 pacid=23166807 polypeptide=Lus10031042 locus=Lus10031042.g ID=Lus10031042.BGIv1.0 annot-version=v1.0 ATGCCCCCGGCGGCATTGGATATCGACTCTACCATGGCTTCTTCCCTCGATCCTAGCCCTTTCGTATCCACCATCAGTTTCAATTTCGGCGGGGATAGTC AGGGAAGCTACAACACTTTTACCTGCGGAGATGGCGGTCACCTCGATATTGATTCCGTGCCGCGGAGCAAGTCGGCTACTAGGTCAGCTGCACCGGGCCG GACTCGGCCCAGGATGGTGAAGGTGAGGAAGCAATTGAATGGGCGGAACAAGGCGGCGCCGGATGATGGTTTCGGGTTTAATCCTTTTAATACTTCTAAT CCGATTTCTGAGAAATGTGATCCTGGAGGAGTTAATTCTTCTGGCACCGAGAGTTTCGTGTTTGGAGCTCGAGTAGGTGGTTCTGAATCCGATTTGAATG ATGCAGCGAACTTGAGTTCTGGTGCAGGGTTTAGTTTCGGAGCTAGCAATATACAGTCTGATAACATAGAGGTTACGGGTTCTGCTTCTTATGTTGCTTT TGGGAAGGATTACTTGGGTCCTGAGTTGAATTTGAATGGCAAAAAGAATCAAACTGTTCAAACTTCAGATTCAGCTGGCGTTGGAGTTGCCAGTGGAGCT AGTTGTCACGTCGATAATGGAACAGATACATTTTCATTTGATAGTACCAACAACAAGGCTTCTACCCCAGATGGATGTACGGTTGAAACATCATGCAAAG ATGCTAGAGACTTTGATAGTGGTAGCACAAACATTGTTGGTGATCTCCCAGATAAGATGAACAAGTTGAACATTGACAAACCTAAGCATCTTGATGAAGC TTACGACAAATATTCGTGTCATGACAGTGTTCCTTCATTTGCATTCGGAGGTAGTAAAGTAGCTACCGGTTTTTCTTCTAGCAGTGTGAATGGTGAAACA TGTGAAGGGAGTATGCCAGATGCTAAAGTTGCTGAGGTTACTGAAAGTGAGAAGTTAGGATCAAACAAGGAGTGGAATCCTGCTATGCCTTGTGCTTCAA ATGGATATTCTAGCTCAGAGCCGTCTAGAATGCAGTCTGCATTTGCAAGTTCTTCCTTTGAGGGCGGAATAGAGCATGGTCAAGTTAGTGATGACACAGA GTTCAGCCAAGCGGCTTCAACTTCTTCATCTTCATGGGTTGGAATTGGCTCTGAAGGTTCAGATGCACCTGATGTGGAGCCTGTGAGAGGTGAAAAAAAT TCATGTTCAACAAGTTCTTCTGATGCATTACGAGTTCCAGTTACAGAATTCAGAACACCAGAATGGGATCCTGCTCGTTTAAAAGCAAGCTTATTCCCCA AATTCAATAAGAAACTGGATCCTACTTCAAAAACTAGGTTGAAAAGGGATAAGAAGTGGAAGCCATCTATAGGGAGGAGGAAGCATCCTTCCCAGCATAA TCACCTGCCTGATCAAGCTCATGTGAAACATGACGACAGCCCCAAAGAGAATTTGAAATCACCACAAAGTTGCTCGCCGATGGATTTTTCACCATACAAC GGTAATGCAACAGAAGAGCAATTTACTTTTAGTTATAATGTTGAATCAAATGACTCTGAGTCACATCCAACCATGAATGCTGAAGATCATGGTAAATCAA GAGAGGAAGTCGGTGGAAGTCATCATGACTGTCATTCTGAAAGGCATTTGACTGATTTTCTTGTTGGGGCAGGAATTACCCTCTGTGGTTCTGGTGCTGA ATCGGTCTACGGTAACAGTAGTAGTGGTGTGATTGCGGACACTTTATGTAAGGAGAGTAGCAAGCAGGTGCGATTTCATTGTGATCCTGAACTAGAAATG AAAACAGGGATGTTTTCTTTTGCTGCTGGCTGTTTGGAAAATAATTTACCTGAACAGAGGCATCGATATAAAAAGAAAAACCGGAGGAAACCCAATGGAT CAAGTGTTATTTCATCAAGTCCTGATGTGAAGCTTCATCCATCATCTCTGAAGAATGTGACTGATAACGCCACAAATTCATCTTTGGACAAAAACAGTAC ACAAGAGAAAACTGGCCATTTATTTTCAGAAGCAATTATGGGGAACAACCCTGACTTGAAGGATCAGGTGACAAGGCCTTTTGTACCACCAACTGTTGCC ATTATCGGAGCATGTGAAGCATGGCGACACAGAGGAAATCAAGCTTATAAAGCTAGTGATCTCTCAAAAGCTGAGGACTTCTACACACAAGGCATAAATT CGGTTCCTCATGCTGAGTTATCAGCATGCCTAGAGCCTCTTGTTATTTGTTATAGCAACCGGGCAGCAACACGGCTCTCTCTTGGCAATATCAGGGAAGC TTTACAAGATAGCCTGATGGCTGCTTCTTTGGATCCCAGCTTTCTCAAAGCTCAGATGAGAGCTGCAAATTGCTATCTCCTGCTGGGGGAAGTCAACGAT GCATTGCAGCATTTCAATAAATGCTTGGAAGCCAGCAATGGTGTTTGTTTGGATCGGAGAATCACCTTAGAAGCAGCTGGTGGGGTTCAAAAGGCTCAGA AAGTTGCTGATTGTATTGATCGTTCCAAAGAGCTATTGGAACAAAAAACTCTTGATGCTTCATTGGCTGCATTAGAGATACTTGCTGAAGCTTTATCGCT TAGCCCGTATTCAGAAAGATTGGTGCAATTAAAAGCAGAGTTCATGTTCATGTTACAGAAATATGAAGAGGTGATTAAATTGTGTGAGCAGACTCTTCCT GCCGGCGAAGCAAATTTTATTTCCATAGGCAATGATGGCTTAGCAGTCGACGATATTCATAGGTGCTCGTTCCCAAGGCTGTGGAGATGGCGGTTGATAT CAAAATGCTACTTTAGTTTGGGGAAGTTAGATGCTGCTCTTGATTTACTCAGGAAGATAGAGAAGATGGGACCCATCAGCGACAAGCATGCAAGTGGGCT GTTCGAATCCTCAATTTCACTAATTGCAACCATCCGTGATCTACTAAATCGGAAGAGTGCTGGGAATGATGCCTTCCAATGTGGGAACTACAAAGAAGCT GTGGAGCAGTACTCAGCTGCTTTATCTAGCAACATTGAATCACGCCCTTTTACTGCTATCTGTTTCTGTAACCGTGCTGCCGCATACCAAGCTATGGGCA ATTTAGTCGATGCCATAGCTGACTGCAGTCTAGCGGTAGCACTTGATGAAAATTACTCAAAGGCTGTCTCAAGGAGAGCCACCTTGCATGAGATGATCAG AGATTATGGTCAATCAGCAAGTGATCTTCAAAGATTTATCGCCATTCGGGAAAATAAATCTGATGCTGGGAAGTCTAGCACACCTCAGAAATCTACCGGC GGGTCAAGAGAGCTAAAGCAATATCGTCGGAGATTGTCCTCAATGGAAGAAGAAGCAAAAAAAGGAATCCCACTGGATTTATACAAGATACTGTAA
AA sequence Show only first row Show all	>Lus10031042 pacid=23166807 polypeptide=Lus10031042 locus=Lus10031042.g ID=Lus10031042.BGIv1.0 annot-version=v1.0 MPPAALDIDSTMASSLDPSPFVSTISFNFGGDSQGSYNTFTCGDGGHLDIDSVPRSKSATRSAAPGRTRPRMVKVRKQLNGRNKAAPDDGFGFNPFNTSN PISEKCDPGGVNSSGTESFVFGARVGGSESDLNDAANLSSGAGFSFGASNIQSDNIEVTGSASYVAFGKDYLGPELNLNGKKNQTVQTSDSAGVGVASGA SCHVDNGTDTFSFDSTNNKASTPDGCTVETSCKDARDFDSGSTNIVGDLPDKMNKLNIDKPKHLDEAYDKYSCHDSVPSFAFGGSKVATGFSSSSVNGET CEGSMPDAKVAEVTESEKLGSNKEWNPAMPCASNGYSSSEPSRMQSAFASSSFEGGIEHGQVSDDTEFSQAASTSSSSWVGIGSEGSDAPDVEPVRGEKN SCSTSSSDALRVPVTEFRTPEWDPARLKASLFPKFNKKLDPTSKTRLKRDKKWKPSIGRRKHPSQHNHLPDQAHVKHDDSPKENLKSPQSCSPMDFSPYN GNATEEQFTFSYNVESNDSESHPTMNAEDHGKSREEVGGSHHDCHSERHLTDFLVGAGITLCGSGAESVYGNSSSGVIADTLCKESSKQVRFHCDPELEM KTGMFSFAAGCLENNLPEQRHRYKKKNRRKPNGSSVISSSPDVKLHPSSLKNVTDNATNSSLDKNSTQEKTGHLFSEAIMGNNPDLKDQVTRPFVPPTVA IIGACEAWRHRGNQAYKASDLSKAEDFYTQGINSVPHAELSACLEPLVICYSNRAATRLSLGNIREALQDSLMAASLDPSFLKAQMRAANCYLLLGEVND ALQHFNKCLEASNGVCLDRRITLEAAGGVQKAQKVADCIDRSKELLEQKTLDASLAALEILAEALSLSPYSERLVQLKAEFMFMLQKYEEVIKLCEQTLP AGEANFISIGNDGLAVDDIHRCSFPRLWRWRLISKCYFSLGKLDAALDLLRKIEKMGPISDKHASGLFESSISLIATIRDLLNRKSAGNDAFQCGNYKEA VEQYSAALSSNIESRPFTAICFCNRAAAYQAMGNLVDAIADCSLAVALDENYSKAVSRRATLHEMIRDYGQSASDLQRFIAIRENKSDAGKSSTPQKSTG GSRELKQYRRRLSSMEEEAKKGIPLDLYKIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10031042 [exp]	0	1
AT1G58060			RNA helicase family protein (....		Lus10020816 [exp]	1.4	0.9617
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	1.4	0.9599
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	3.7	0.9232
AT4G01860			Transducin family protein / WD...		Lus10009986 [exp]	4.0	0.9226
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10000108 [exp]	4.5	0.9158
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10002459 [exp]	4.9	0.9111
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	5.5	0.9331
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10020228 [exp]	7.5	0.8996
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	10.7	0.9038
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	10.8	0.9345

Compare expression of checked genes

Lus10031042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.