Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 676 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 655 / 0 EFR EF-TU receptor (.1) AT3G47110 655 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 610 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 608 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 404 / 1e-122 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 392 / 5e-119 Leucine-rich repeat protein kinase family protein (.1) AT3G49670 386 / 2e-117 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 385 / 4e-117 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 385 / 4e-115 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035429 [exp] 1595 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 1393 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 1119 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 1102 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 917 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 896 / 0 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 884 / 0 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 862 / 0 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 751 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 759 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 754 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 749 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 730 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 728 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 728 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 725 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 722 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 721 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 720 / 0 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031043 pacid=23166818 polypeptide=Lus10031043 locus=Lus10031043.g ID=Lus10031043.BGIv1.0 annot-version=v1.0 ATGAAGAAGGATAACCAAAGCTCTCATTTCCTCATCTCCTTCCTGCTTTTACTCTTAATCTCACTCCATAATTGTCTTTTCCAAGCTAATTATGCATCAG GAAACAACCTCACCGACCAGCTCGCCTTACTCGAATTCAAGAACGCAATAACCAACGACCCGGATTCCGTTCTAACCTCATGGAACGACTCCCTCCATTT CTGCAACTGGCCGGGAATCACCTGCAACACTGAGCAGAGAGTCACTTCTCTGTCCTTGAAAGGACGCAACTTGGTGGGCACTCTATCTCCGCACATTTCC AACTTCACCTTCCTCCAATCCATCAACCTCATGAACAACAGCTTCCACGGCCAAATCCCTCTACAAATCGGAAACCTCCGCCGCCTCCAGACACTTAACC TATCGACAAACTTCTTCACGGGCCAGATTCCGCCAAACCTCACGCGTTGCTTGGATCTCACGACAGTCCTGGTGGGCGCAAACGGTATTGAAGGAACAAT TCCTCAAGATATCGGGCTTTTGTCGAAGCTTACACGCTTCAGGATGGAATCCAACTTCCTGACAGGTCAGCTCCCAGCTTCCTTGGGGAACCTGACACAG CTTGTGGAGTTCGCCGTTCCGTTTAATGATCTAGTCGGGGAAATTCCTGAAACTGTGGGTCAGCTCTCCAGGATGAGTATATTCGTCGTGGCGGTGAACC AACTCAACGGTACCATTCCGGCAACGCTATATAACTTGTCCTCCATGACCATGCTGACGTTAATTTACAACAAGTTCCACGGTAGGATCCCGGAGGATAT CGGACTCACTCTGCCGAATCTCCAGGGATACTACATATCCAGGAACTGGATGACCGGGCCAATACCGCCCTCATTTTGCAATGCTTCTCAATTGTACGAG CTCAACATGAACGCGAACAGCTTGACTGGTAGCATTCCGACATGTTTCTCGACTCTGCCAGGTTTTTTGTACCTGAATATTGGAGCCAATAATCTTGGAA CCGGTAAAGCTGGCGACTTTGATTTCATAACAGGGTTGACTAATTGCAGCCAACTCGGGGAACTTGGCGTTAGCGAGAATAATCTCGGAGGGCCTTTACC GAACTCTTTAGGGAACCTGTCGGATCAACTCTATCAATTGTATCTCGGAGTAAATCCGATCGGCGGGGAAATTCCTGAAGGCCTGAAGAGTCTGGTCAGC TTGAATAAGCTGGACCTGATGAATTCCTTTCTCTCAGGAAACATTCCTACATATCTTAGCAAGCTTGGAAAACTACAAGGAGTATTGTTCAATGGTAACC AGTTATTCGGTCGAATTCCGGCCTCATTCGGAAACTTGAGCCTGTTGAACAAACTCGATGTATCAAATAACCAACTTGAAGGACCCATTCCTTCGAGTCT GGGAAGCTGTCAACAGCTGAACCTCTTGGATGTCTCTGGCAACAAACTGACCGGTGCAATTCCAAGACAACTTCTCAGCCTTTCGTCCCTCTCAACTGGA CTCTATCTATCCACAAACTCCTTCAGTGGGGGGATTCCAGATGAAATTGGAAAGCTAGAGAATCTGGATGTTCTGGATCTGTCTTACAACAACCTGACTG GCGGGATTCCCATAACTATTGGAGACTGCAAATCCCTGAAATCTCTGTTATTGCAGAGCAACTCTTTTGATGGGAAAATCCCTTCAGCTCTTGCCTCCAT CAAAGGCATGGAAATATTGGATCTTTCCATGAATAAGTTCACCGGTGAGATCCCATCTGAACTACAGAGCATTCAAGCTTTGCAACAGTTGAATCTCTCG TTCAACAATTTGCAAGGTGAGGTTCCTGAAAAAGGCGTGTTTGCAAATACAAGCGGCTTGTCTCTCACTGGGAACGCCTTGCTTTGCGGTGGAGCCATCG AACTACACTTGAAAAAGTGCCCAACTGCAAAAACAATTAAGCAGAAGCGAGCTGCAACAGTGAAGCTGACTGTTGAAATAGCATTACCATCTCTGACTTT TCTCTTACTGTCTGCAATTCTGTATCAGTGGAAGCTATGGAGATCAAGGAAGAAATCTGTTATTGGAGATACTATCTTGAGCCACTTTGTTATGGTCTCG TACAAAGACCTCCATCAAGGAACTAATGGGTTCTCTGATGATAATCTGATTGGATCCGGTGGTTACGGCACCATCTACAAAGGAGTTTTGGATCAAATCG GTCCGGCCGCCTTAGTAGTAGCTGTGAAAGTACTCAACATTCAGGAAAATAACAAAGCTGGTAAGAGCTTGTTAGCTGAATGCAATGCGTTGAAAAACGT CCGGCACAGGAACCTTGTTAGAGTCCTGACTTACTGCTCTAGCTTGGATTACAAGGGTAATGACTTCAAGGCTTTGGTTTTCGAGTTCATGTCGAACGGT AGCGTGGAAGACTGGCTGCACTCCGATCGTAACAACTTGATGAGCCCAGTTCAGAGGCTTAACATTTTGGTGGATGTTGCGTCTGCACTGCATTATCTGC ATGATCTGTGCGAAACTCCGGTCGTTCATTGTGACTTGAAGCCGAGCAATGTGCTTTTGGATACTGATATGGTTGCTCATGTCGGAGACTTTGGTCTGGC AAGGATTCTGTCACCGTCGAACAGCTCGTCCGGGAATGAAAGTAGCACCATTGGAATAAGAGGAACCATTGGTTATGCTCCTCCAGAGTACGGAATGGGA ATGCCAGTATCGAATGAAGGGGATGTGTATAGTTACGGAATCCTTATATTAGAGATTTTAACGGGGAAAAGACCAACAGATGAGATGTTCAAAGACGGGA AGAATCTACGTGACTTTGTGAAGGCATCAATTCCGGATGGAATAACATCAGTACTAGACTCATCAATGTCTGTTTCTTTATTAGCTACCGCTGGAGATCA AAGGAGACTAGTAATAGTAGGAAACATGGAATTGGCTGATGACGACAATAATCACGGGAGGAGCATTGAAATTGTAGAATGGGCGGGTATGTCTGAAAGT GTCAAAGAGTGTTTGGTTTCACTACTTGAAATTGGGCTGGGTTGCTCTACAGATAGTGCAGGAGAGCGTACGAAGATGGCTGATGTTGCGAGAAAGATGG CTTCCTTGAGGAATGATTTTGTTGCAGCAACGTCTGTCGGGAGGCGCAGGCCACAACAAAGCTAA
AA sequence Show only first row Show all	>Lus10031043 pacid=23166818 polypeptide=Lus10031043 locus=Lus10031043.g ID=Lus10031043.BGIv1.0 annot-version=v1.0 MKKDNQSSHFLISFLLLLLISLHNCLFQANYASGNNLTDQLALLEFKNAITNDPDSVLTSWNDSLHFCNWPGITCNTEQRVTSLSLKGRNLVGTLSPHIS NFTFLQSINLMNNSFHGQIPLQIGNLRRLQTLNLSTNFFTGQIPPNLTRCLDLTTVLVGANGIEGTIPQDIGLLSKLTRFRMESNFLTGQLPASLGNLTQ LVEFAVPFNDLVGEIPETVGQLSRMSIFVVAVNQLNGTIPATLYNLSSMTMLTLIYNKFHGRIPEDIGLTLPNLQGYYISRNWMTGPIPPSFCNASQLYE LNMNANSLTGSIPTCFSTLPGFLYLNIGANNLGTGKAGDFDFITGLTNCSQLGELGVSENNLGGPLPNSLGNLSDQLYQLYLGVNPIGGEIPEGLKSLVS LNKLDLMNSFLSGNIPTYLSKLGKLQGVLFNGNQLFGRIPASFGNLSLLNKLDVSNNQLEGPIPSSLGSCQQLNLLDVSGNKLTGAIPRQLLSLSSLSTG LYLSTNSFSGGIPDEIGKLENLDVLDLSYNNLTGGIPITIGDCKSLKSLLLQSNSFDGKIPSALASIKGMEILDLSMNKFTGEIPSELQSIQALQQLNLS FNNLQGEVPEKGVFANTSGLSLTGNALLCGGAIELHLKKCPTAKTIKQKRAATVKLTVEIALPSLTFLLLSAILYQWKLWRSRKKSVIGDTILSHFVMVS YKDLHQGTNGFSDDNLIGSGGYGTIYKGVLDQIGPAALVVAVKVLNIQENNKAGKSLLAECNALKNVRHRNLVRVLTYCSSLDYKGNDFKALVFEFMSNG SVEDWLHSDRNNLMSPVQRLNILVDVASALHYLHDLCETPVVHCDLKPSNVLLDTDMVAHVGDFGLARILSPSNSSSGNESSTIGIRGTIGYAPPEYGMG MPVSNEGDVYSYGILILEILTGKRPTDEMFKDGKNLRDFVKASIPDGITSVLDSSMSVSLLATAGDQRRLVIVGNMELADDDNNHGRSIEIVEWAGMSES VKECLVSLLEIGLGCSTDSAGERTKMADVARKMASLRNDFVAATSVGRRRPQQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10031043 [exp]	0	1
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042641 [exp]	8.4	0.7973
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	8.7	0.8669
AT5G65010		ASN2	asparagine synthetase 2 (.1.2)		Lus10031300 [exp]	13.6	0.8312
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10035196 [exp]	22.1	0.8485
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10022627 [exp]	23.3	0.8010
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025695 [exp]	31.7	0.7671
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10018342 [exp]	53.2	0.7291
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025073 [exp]	58.9	0.7763
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10019978 [exp]	64.3	0.7945
AT1G68630			PLAC8 family protein (.1)		Lus10008890 [exp]	82.6	0.7158

Compare expression of checked genes

Lus10031043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.