Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10210 344 / 6e-121 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT4G35750 186 / 6e-59 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G69340 64 / 2e-11 appr-1-p processing enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035431 [exp] 491 / 1e-178 AT3G10210 353 / 2e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10041841 [exp] 209 / 4e-68 AT4G35750 323 / 7e-114 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10028388 [exp] 203 / 7e-66 AT4G35750 313 / 5e-110 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10021230 [exp] 197 / 2e-63 AT4G35750 265 / 7e-91 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10005640 [exp] 194 / 3e-62 AT4G35750 260 / 6e-89 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10030413 [exp] 70 / 2e-13 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10037119 [exp] 67 / 1e-12 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 64 / 2e-11 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043166 [exp] 412 / 1e-147 AT3G10210 359 / 6e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G246800 [exp] 196 / 6e-63 AT4G35750 282 / 9e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.002G014700 [exp] 187 / 3e-59 AT4G35750 296 / 3e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G107300 [exp] 166 / 3e-51 AT4G35750 284 / 1e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.010G161500 [exp] 63 / 5e-11 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.008G093100 [exp] 61 / 1e-10 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031044 pacid=23166737 polypeptide=Lus10031044 locus=Lus10031044.g ID=Lus10031044.BGIv1.0 annot-version=v1.0 ATGGGAAGCTCTTCGACGGAGGATTTCTCGGTGTTCGTGCTGGCGTCAGATTTGGGAATAGATGCCACTCCCTTCTTGACGAATCGGCCTAGAGAAGGAG ATGGTGATGCCGACGGAGAAGACGACAGTGAGAACTGGCAAGATTGCTCGCAGTACCTTGTTTCTGACGAAGACTTCTCCGACCTCGATCTGCTCCAGTT CTTCTGCATCCAGGGCTCTGATCGATCCGGGAACCGCATCTTCCGCATCGTTGGCAAACACTTCCCCGCTCCAGTTATTAGTGCAGAGCGGCTGAAGAAG TACATTTTTCACAAAATATGCAGCGAGTTGCCTGAAGGACCATTTTCTATCGTCTACATGCATAGTACGGTGCAAAAAGAGGATAATTCTCCAGGTATAA CCGTCTTGAGGTGGATATATGAAGAACTTCCAGGAAACTACAAGGACAGGCTTCAGACTGTGTACTTCATTCACCCCGGTCTCCGCTCAAGGCTTGCAAT TGCCACCCTCGGCCGATTGTTCTTAACTGGAGGGTTGTATTGGAAGATCAAGTACGTGAGCCGGCTTCAGTATCTCTGGGCAGACATTAAGAAAGGGGAA GTGGAGATCCCTGAATTTGTTCAAAACCACGATGATGTGCTTGAGGATCGGCCACTAACTGATTATGGGATTGAACCAGACCCTTTTCATCTCAGTGGAG TCTCTGCAAATCCCTACTCGTTGGGAAGATACGAAGACCGATGGGGTTCGAGAGAGTTCGCTCTCTAG
AA sequence Show only first row Show all	>Lus10031044 pacid=23166737 polypeptide=Lus10031044 locus=Lus10031044.g ID=Lus10031044.BGIv1.0 annot-version=v1.0 MGSSSTEDFSVFVLASDLGIDATPFLTNRPREGDGDADGEDDSENWQDCSQYLVSDEDFSDLDLLQFFCIQGSDRSGNRIFRIVGKHFPAPVISAERLKK YIFHKICSELPEGPFSIVYMHSTVQKEDNSPGITVLRWIYEELPGNYKDRLQTVYFIHPGLRSRLAIATLGRLFLTGGLYWKIKYVSRLQYLWADIKKGE VEIPEFVQNHDDVLEDRPLTDYGIEPDPFHLSGVSANPYSLGRYEDRWGSREFAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10210			SEC14 cytosolic factor family ...		Lus10031044 [exp]	0	1
AT5G08139			RING/U-box superfamily protein...		Lus10023235 [exp]	6.0	0.8252
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10041819 [exp]	7.2	0.8297
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10041800 [exp]	9.2	0.8170
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Lus10006111 [exp]	9.4	0.7914
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10001591 [exp]	10.6	0.7803
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10034499 [exp]	12.2	0.8227
					Lus10022888 [exp]	13.6	0.7465
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10022514 [exp]	13.8	0.8125
AT4G25670			unknown protein		Lus10038842 [exp]	15.0	0.7965
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	15.7	0.8061

Compare expression of checked genes

Lus10031044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.