Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35490 223 / 1e-75 MRPL11 mitochondrial ribosomal protein L11 (.1) AT1G32990 72 / 4e-16 PRPL11 plastid ribosomal protein l11 (.1) AT5G51610 51 / 3e-08 Ribosomal protein L11 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035432 [exp] 271 / 8e-95 AT4G35490 272 / 2e-95 mitochondrial ribosomal protein L11 (.1) Lus10010145 [exp] 70 / 4e-15 AT1G32990 306 / 7e-107 plastid ribosomal protein l11 (.1) Lus10017349 [exp] 70 / 6e-15 AT1G32990 306 / 6e-107 plastid ribosomal protein l11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G058600 [exp] 254 / 5e-88 AT4G35490 239 / 2e-82 mitochondrial ribosomal protein L11 (.1) Potri.011G150700 [exp] 71 / 2e-15 AT1G32990 303 / 3e-105 plastid ribosomal protein l11 (.1) Potri.001G450800 [exp] 70 / 4e-15 AT1G32990 308 / 4e-107 plastid ribosomal protein l11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03946 [flax] [poplar] Ribosomal_L11_N Ribosomal protein L11, N-terminal domain PF00298 [flax] [poplar] Ribosomal_L11 Ribosomal protein L11, RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10031045 pacid=23166760 polypeptide=Lus10031045 locus=Lus10031045.g ID=Lus10031045.BGIv1.0 annot-version=v1.0 ATGGCGTCGGTGAAGGAAATCCTAACCCGGAGGCCACTCGCCGCGACGATCCGCCTTACAGTCCCTGCGGGAGGAGCTCGTCCGGCACCTCCCGTTGGTC CGGCGCTTGGTCAGTACCGTCTGAACCTGATGGCGTTCTGCAAGGACTTCAACGCGCGAACTCAGAAGTACAAGCCAGAGACTCCGATGTCGGTGACCAT TACGGCGTTCAAGGACAACACGTTCGAGTTCACTGTCAAGTCTCCGTCGGTGACTTGGTACTTGAAAAAGGCCGCCGGGATCGAGTCCGCTAGCAGCCGG CCGGGACACGTGATGGCGTCCACCGTGACGTTGAAGCACGTGTATGAAATTGCCAAGATCAAGCAGTCGGATCCTTACTGCCAGTACATGTCGCTTGGGT CCATCAGTAGGCCGTTCTTCGGGACGGCCAATACCATGGGGATTAAAGTGGTGAAGGATTTGGAATGA
AA sequence Show only first row Show all	>Lus10031045 pacid=23166760 polypeptide=Lus10031045 locus=Lus10031045.g ID=Lus10031045.BGIv1.0 annot-version=v1.0 MASVKEILTRRPLAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESASSR PGHVMASTVTLKHVYEIAKIKQSDPYCQYMSLGSISRPFFGTANTMGIKVVKDLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Lus10031045 [exp]	0	1
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10004617 [exp]	2.4	0.9636
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Lus10035432 [exp]	2.4	0.9400
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	3.2	0.9679
AT5G40660			ATP12 protein-related (.1)		Lus10009910 [exp]	3.2	0.9331
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	10.4	0.9500
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10035414 [exp]	10.4	0.9488
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10016137 [exp]	10.5	0.9327
AT2G04390			Ribosomal S17 family protein (...		Lus10004208 [exp]	11.4	0.9464
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10000590 [exp]	14.3	0.9154
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	16.0	0.9298

Compare expression of checked genes

Lus10031045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.