Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41510 422 / 3e-144 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 389 / 8e-132 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT1G75450 307 / 8e-100 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G21482 282 / 3e-90 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT5G56970 276 / 3e-88 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT4G29740 269 / 3e-86 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT2G19500 261 / 1e-82 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT5G06580 50 / 2e-06 FAD-linked oxidases family protein (.1) AT3G47930 45 / 6e-05 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) AT1G20780 44 / 0.0002 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035433 [exp] 651 / 0 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10018039 [exp] 454 / 4e-160 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1) Lus10016363 [exp] 421 / 2e-146 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10005317 [exp] 419 / 2e-145 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 421 / 5e-145 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10042035 [exp] 404 / 2e-139 AT2G41510 367 / 9e-123 cytokinin oxidase/dehydrogenase 1 (.1) Lus10003845 [exp] 304 / 3e-100 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10024289 [exp] 308 / 4e-100 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10026471 [exp] 283 / 1e-90 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G044100 [exp] 442 / 1e-152 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G047900 [exp] 430 / 7e-148 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.003G203600 [exp] 423 / 2e-145 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 417 / 7e-143 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.002G030500 [exp] 317 / 7e-104 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 315 / 4e-103 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G152500 [exp] 283 / 8e-91 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.006G221000 [exp] 265 / 6e-84 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.007G066100 [exp] 243 / 5e-75 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.016G064800 [exp] 47 / 2e-05 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10031046 pacid=23166879 polypeptide=Lus10031046 locus=Lus10031046.g ID=Lus10031046.BGIv1.0 annot-version=v1.0 ATGGAATCGCAATTCCACATCATACTACACCACCTGAGATTCCTCACCATCATTTCCCTCTGCTTCATACCTCACCAAACCCAACCCTTCATCAACCAAG CCCCCGAAACCATCCCCGACGAAACTCCACCTTCCTTCGAAACACTAGCTCTAGATGGCTACTTCAGCTACCACGACACAGCAGACGCTGCTAAGGACTT TGGAAACCGCTTCTTTTTTCGGCCAGTGGCGGTCCTACATCCGAGATCAGTCTCTGATATAGCGAGGACATTGAACCATGTATCCGAAATGGGAGCACTT ACCGTGGCTGCTAGAGGTCGCGGCCACTCGCTCCATGGACAGGCGCAAGCTCACGGTGGGGTAGTGATCAACATGGGGTCTCTTCCGAGGAGGAAGAGCT TGATTGGAGAAGATGATGGTGGATACTATGTGGAAGTGTCCGGTGGGGAGATGTGGATTAATGTTCTTAAGGAGACATTGAAAGATGGGTTGGCGCCGAA ATCGTGGACGGATTACTTGCATCTCACCGTTGGAGGGACGCTGTCCAACGGCGGCATCAGTGGCCAAGCTTTCCGGCATGGCCCTCAGATCAATAACGTC CGGCAGTTGGAAGTTGTCACTGGTAAAGGAGAAGTGGTTACCTGTTCAGAGAAGCAGAATGCAGAGCTGTTCTTCAGCGTGCTTGGAGGGCTTGGACAGT TTGGGATCATGACCCGAGCTACAATTGCTCTGGAACCTGCACCAGACATGGTGAAATGGATTAGAGTTCTGTACTCGGATTTTTCCAAGTTTTCCAGGGA CCAAGAGCATTTGATATCGCTGGACGAATCATTCGACTATGTCGAAGGGTTCGTGATTATAAACCGAACTGGAATCCTCGACAACTGGAGGTCATCTTTC CATCCCAAGGATCCAGTTCAAGCCAGCCAATTTGTTTCTGATGGTAAAACTCTCTACTGCCTGGAGGTTGCGAAGTATTACAACATACAAGACGAGGGTG ACACTATTGACATGGTAAGTATCTTTATGTTAACAAAAAGACTAACAATAAGCAAAAGAGAAGCTATTTGGATGATTAACCGGTTCAGCTACTCCCAATC TTTTGCAGCAAATCCAGGACCTGTTGTCAGACCTGCAATTCATTGCACCAACCCTTTTTGTCTCAGAAGTCCCTTACCTCAAATTTCTGGACAGAGTCCA TGTTTCTGA
AA sequence Show only first row Show all	>Lus10031046 pacid=23166879 polypeptide=Lus10031046 locus=Lus10031046.g ID=Lus10031046.BGIv1.0 annot-version=v1.0 MESQFHIILHHLRFLTIISLCFIPHQTQPFINQAPETIPDETPPSFETLALDGYFSYHDTADAAKDFGNRFFFRPVAVLHPRSVSDIARTLNHVSEMGAL TVAARGRGHSLHGQAQAHGGVVINMGSLPRRKSLIGEDDGGYYVEVSGGEMWINVLKETLKDGLAPKSWTDYLHLTVGGTLSNGGISGQAFRHGPQINNV RQLEVVTGKGEVVTCSEKQNAELFFSVLGGLGQFGIMTRATIALEPAPDMVKWIRVLYSDFSKFSRDQEHLISLDESFDYVEGFVIINRTGILDNWRSSF HPKDPVQASQFVSDGKTLYCLEVAKYYNIQDEGDTIDMVSIFMLTKRLTISKREAIWMINRFSYSQSFAANPGPVVRPAIHCTNPFCLRSPLPQISGQSP CF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10031046 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039830 [exp]	7.5	0.9137
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	20.0	0.9009
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10036579 [exp]	21.2	0.8965
AT5G42610			Protein of unknown function (D...		Lus10010793 [exp]	25.3	0.8957
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10004225 [exp]	27.0	0.8970
AT5G05220			unknown protein		Lus10034248 [exp]	30.5	0.8400
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Lus10005755 [exp]	35.1	0.8919
AT1G29680			Protein of unknown function (D...		Lus10005415 [exp]	35.5	0.8875
AT2G20820			unknown protein		Lus10037883 [exp]	37.3	0.8481
AT2G20210			RNI-like superfamily protein (...		Lus10022840 [exp]	42.8	0.8809

Compare expression of checked genes

Lus10031046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.