Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57280 122 / 6e-33 Transmembrane proteins 14C (.1) AT3G20510 54 / 4e-09 Transmembrane proteins 14C (.1) AT2G38550 55 / 3e-08 Transmembrane proteins 14C (.1) AT1G50740 47 / 1e-06 Transmembrane proteins 14C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020961 [exp] 278 / 8e-88 ND / Lus10035434 [exp] 261 / 6e-84 AT2G43080 365 / 4e-125 P4H isoform 1 (.1) Lus10006099 [exp] 121 / 6e-33 ND / Lus10003899 [exp] 56 / 1e-08 ND / Lus10019624 [exp] 49 / 5e-07 AT1G50740 177 / 8e-59 Transmembrane proteins 14C (.1) Lus10008541 [exp] 43 / 3e-05 AT1G50740 178 / 3e-59 Transmembrane proteins 14C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139800 [exp] 145 / 6e-42 AT3G57280 172 / 5e-54 Transmembrane proteins 14C (.1) Potri.003G094300 [exp] 143 / 3e-41 AT3G57280 214 / 3e-70 Transmembrane proteins 14C (.1) Potri.016G137200 [exp] 53 / 9e-08 AT2G38550 263 / 4e-86 Transmembrane proteins 14C (.1) Potri.006G108700 [exp] 51 / 6e-07 AT2G38550 275 / 7e-91 Transmembrane proteins 14C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03647 [flax] [poplar] Tmemb_14 Transmembrane proteins 14C
Representative CDS sequence Show only first row Show all	>Lus10031047 pacid=23166754 polypeptide=Lus10031047 locus=Lus10031047.g ID=Lus10031047.BGIv1.0 annot-version=v1.0 ATGGCGATGGCGAAGACGACGGCATCAACCACACTCTCGCAGCTCTCTTGCTTCTCCTCAATCAACCGCAACCTTCACCAGCTCCACCTCCTCCACCATC GCCGGCCTTTCTCCTCCCCGTCCTCTCCTTCTCTGCCTAAGCTATCGATTGTTAGGAGTGTTGAACGGCCGGATAGGGAAGCTTCCAACCCGGATCCGTA CATGGGGTACGAATCTGCATCCAAGTCGCTGCCATACGGTGAAGCGAGTAATTTGGAAGAGAGCAAGAAGATTGATTACGGAAAAGGTGGCGTCTATGGT TCAGCCATGATCCATGACTTCTGTTTCGGTATTCCGTTTGGGGCTCTTGTTCTTAGTGGAGGGCTCATTGGTTTATTGTTCTCAAGAAATGTTACAACTT TTAGCGGGCTGGTAATTGGAGGTGGTTTACTGGCGCTTAGCTCTTACAGCATGAAGATCTGGAAACAAGGGAAGTCCAGTTTACCATTCGTCTTCGGCCA AGCTGTGCTTTCGGCAGCTCTTCTGTGGAAAAACATCGAGGTTTATTCATTGAGCGGAGACTGTAGGATGTTCATGGAAGCTTCGAAGGGTTGGTTTGGG TCGGATTTTAAACTGGTTGTGCGGCAGGGTTCCAAGATCCATTTCGGATTCTTGGAGTTAGTTCATGTTCAGTGGCTGGCCGGAGTTATTCAAGTGGCTG CCGGAAAGAAGTGGGTCATCCCGATTGACTGTGAACTGAAAACGTTGAAACGCACGATTTCAATCACTAGGTTCCACTTGCAGGGGAGACCTGTCCTGAA AATCTATGAAAGATGTGGGAATGGTAAAATCATTTTTGTGATCGTTCCTTGTGAGAAGAACTCCAATGGGTGGAGTGCGTTTTTTAGGCTGTTGCGGGAT CGAGGCCGTTTGCCTCCGGCGCCTCCAGTAGCCAGGTTAGGAAGCCGTTCTTTCGCAGAGGTGGTATCCTGCAAAACTATGCCACTGGCAGGGTGTTGA
AA sequence Show only first row Show all	>Lus10031047 pacid=23166754 polypeptide=Lus10031047 locus=Lus10031047.g ID=Lus10031047.BGIv1.0 annot-version=v1.0 MAMAKTTASTTLSQLSCFSSINRNLHQLHLLHHRRPFSSPSSPSLPKLSIVRSVERPDREASNPDPYMGYESASKSLPYGEASNLEESKKIDYGKGGVYG SAMIHDFCFGIPFGALVLSGGLIGLLFSRNVTTFSGLVIGGGLLALSSYSMKIWKQGKSSLPFVFGQAVLSAALLWKNIEVYSLSGDCRMFMEASKGWFG SDFKLVVRQGSKIHFGFLELVHVQWLAGVIQVAAGKKWVIPIDCELKTLKRTISITRFHLQGRPVLKIYERCGNGKIIFVIVPCEKNSNGWSAFFRLLRD RGRLPPAPPVARLGSRSFAEVVSCKTMPLAGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57280			Transmembrane proteins 14C (.1...		Lus10031047 [exp]	0	1
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035655 [exp]	2.6	0.8754
AT5G57500			Galactosyltransferase family p...		Lus10015527 [exp]	9.5	0.7741
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	10.8	0.8486
AT5G27490			Integral membrane Yip1 family ...		Lus10031511 [exp]	18.8	0.8039
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	25.4	0.7875
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10018588 [exp]	27.0	0.8165
					Lus10019700 [exp]	27.7	0.7890
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10032817 [exp]	30.3	0.8162
AT3G08670			unknown protein		Lus10021382 [exp]	30.7	0.8105
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10020659 [exp]	33.3	0.8093

Compare expression of checked genes

Lus10031047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.