Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43080 406 / 7e-145 AT-P4H-1 P4H isoform 1 (.1) AT1G20270 230 / 2e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35810 225 / 2e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G66060 223 / 8e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G17720 214 / 7e-69 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G28480 192 / 3e-60 Oxoglutarate/iron-dependent oxygenase (.1.2) AT3G28490 189 / 2e-59 Oxoglutarate/iron-dependent oxygenase (.1) AT3G06300 186 / 5e-58 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1) AT5G18900 185 / 1e-57 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35820 159 / 5e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035434 [exp] 405 / 9e-142 AT2G43080 365 / 4e-125 P4H isoform 1 (.1) Lus10028404 [exp] 229 / 5e-75 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10041857 [exp] 229 / 6e-75 AT5G66060 488 / 2e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10032183 [exp] 205 / 4e-65 AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10005620 [exp] 203 / 3e-64 AT1G20270 465 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10012014 [exp] 193 / 1e-60 AT5G18900 448 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016271 [exp] 192 / 2e-60 AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014502 [exp] 187 / 1e-58 AT3G28480 398 / 4e-140 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10017249 [exp] 189 / 3e-58 AT1G20270 455 / 3e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G232100 [exp] 401 / 1e-142 AT2G43080 456 / 4e-164 P4H isoform 1 (.1) Potri.005G108000 [exp] 228 / 2e-74 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.005G245300 [exp] 214 / 6e-69 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G060800 [exp] 211 / 1e-67 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G197700 [exp] 201 / 1e-63 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G075100 [exp] 194 / 5e-61 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.017G075300 [exp] 192 / 1e-60 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.007G052600 [exp] 163 / 5e-49 AT4G33910 353 / 4e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G296800 [exp] 151 / 9e-45 AT4G33910 441 / 6e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G091000 [exp] 149 / 7e-44 AT4G33910 431 / 9e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10031048 pacid=23166839 polypeptide=Lus10031048 locus=Lus10031048.g ID=Lus10031048.BGIv1.0 annot-version=v1.0 ATGTCCCCTACGCAGCTTATAAAAAAAATCCCCTGCGCATCTTTTTTTCCAGGAATTCCTGACTGGAACAATGATAAAGAAGCAGAGAGTCTGAGGATTG GACATGTCAAACCAGAAGTTATCAGCTGGTCACCGAGAATCATCGTATTGCACAATTTTTTGAGCACGGAGGAATGTGACTATCTTAGGGCCTTAGCTCG ACCTCGCCTTCAGGTTTCAACTGTCGTGGATGCAAAAACAGGAAAGGGAATAAAGAGTAATGTTAGAACAAGCTCTGGAATGTTTCTAAGCTCGGCCGAG AGAAGGTACCCTTTGGTAAAGGCTATTGAGAAAAGGATCGCCGTGTATTCTCAAGTTCCTTCGGAGAATGGTGAGCTTATCCAAGTATTAAGGTATGAGA AGGAACAGTTTTACAAGCCTCATCATGACTACTTCTCTGATACTTTTAACATTCAACGTGGCGGCCAGCGAGTAGCAACGATGTTGATGTACTTGAGCGA CAATGTCGAGGGTGGAGAAACTTATTTCCCTCTGGCAGGATCAGGCCAGTGTACTTGCGGTGGGGAGGTAATGAAAGGCTTGTCCGTAAAGCCAGTTAAA GGAGACGCGGTTCTCTTTTGGAGCATGGGTTTAGATGGTGAATCGGATCCGAAGAGCATACATGGAGGATGCAAGATTCTCTCCGGAGAGAAATGGTCAG CTACAAAATGGATGAGGCAAAAATCTGCCAGCTAA
AA sequence Show only first row Show all	>Lus10031048 pacid=23166839 polypeptide=Lus10031048 locus=Lus10031048.g ID=Lus10031048.BGIv1.0 annot-version=v1.0 MSPTQLIKKIPCASFFPGIPDWNNDKEAESLRIGHVKPEVISWSPRIIVLHNFLSTEECDYLRALARPRLQVSTVVDAKTGKGIKSNVRTSSGMFLSSAE RRYPLVKAIEKRIAVYSQVPSENGELIQVLRYEKEQFYKPHHDYFSDTFNIQRGGQRVATMLMYLSDNVEGGETYFPLAGSGQCTCGGEVMKGLSVKPVK GDAVLFWSMGLDGESDPKSIHGGCKILSGEKWSATKWMRQKSAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10031048 [exp]	0	1
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10018442 [exp]	1.0	0.8811
AT3G46020			RNA-binding (RRM/RBD/RNP motif...		Lus10040854 [exp]	6.3	0.8775
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10023203 [exp]	8.1	0.8797
AT3G09890			Ankyrin repeat family protein ...		Lus10014410 [exp]	8.5	0.8536
AT3G60540			Preprotein translocase Sec, Se...		Lus10010009 [exp]	10.1	0.8791
AT5G26250			Major facilitator superfamily ...		Lus10005870 [exp]	11.8	0.8053
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	21.9	0.8342
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10035780 [exp]	26.1	0.8373
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019388 [exp]	30.1	0.8699
AT1G34750			Protein phosphatase 2C family ...		Lus10033453 [exp]	30.2	0.8487

Compare expression of checked genes

Lus10031048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.