Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10300 265 / 1e-89 Calcium-binding EF-hand family protein (.1.2.3.4.5) AT5G04170 263 / 1e-88 Calcium-binding EF-hand family protein (.1) AT2G27480 134 / 5e-40 Calcium-binding EF-hand family protein (.1) AT4G37010 43 / 2e-05 CEN2 centrin 2 (.1.2) AT3G50360 41 / 8e-05 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035435 [exp] 313 / 6e-109 AT3G10300 365 / 5e-127 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10042037 [exp] 285 / 1e-97 AT3G10300 350 / 1e-120 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10018041 [exp] 281 / 2e-95 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10043389 [exp] 175 / 6e-56 AT2G27480 238 / 1e-79 Calcium-binding EF-hand family protein (.1) Lus10019545 [exp] 171 / 3e-54 AT2G27480 232 / 3e-77 Calcium-binding EF-hand family protein (.1) Lus10019349 [exp] 41 / 0.0002 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10009353 [exp] 40 / 0.0003 AT3G50360 248 / 5e-84 CENTRIN 1, centrin2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043600 [exp] 276 / 1e-94 AT3G10300 306 / 8e-104 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.006G047300 [exp] 273 / 1e-93 AT3G10300 334 / 5e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.009G163600 [exp] 171 / 3e-54 AT2G27480 229 / 6e-76 Calcium-binding EF-hand family protein (.1) Potri.004G202200 [exp] 171 / 7e-54 AT2G27480 232 / 9e-77 Calcium-binding EF-hand family protein (.1) Potri.010G080900 [exp] 45 / 2e-06 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 40 / 0.0001 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.005G138000 [exp] 39 / 0.0005 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10031049 pacid=23166778 polypeptide=Lus10031049 locus=Lus10031049.g ID=Lus10031049.BGIv1.0 annot-version=v1.0 ATGGCCGATCAGGACGGGAGCGGGTTTATCGACGACAAGGAGCTCCAGAGGGCGCTCTCTAGCTACAATCAGAGCTTCAGCTTGAGGACCGTTCACTTGC TCATGTACCTCTTCACCAACACCAACACCAGGAAGATCGGACCAAAAGAGTTCACTCAAGTGTTTTACAGTCTTCAGAGCTGGAGGGGCATTTTCGAGAG GTTCGATAGGGATAGGAGCGGGAAGATTGATGCTAACGAGCTGAAGGAGGCATTGTTGAGCCTTGGCTTTTCAGTCTCTCCTGTTGTTCTCCAGCTGTTG GTGTCCAAGTTCGACAAGACCGGTGGCAGGAATAATGCCATTGAATATGATAACTTCATCGAGTGCTGTCTTACTGTTAAGGGGCTGACGGAGAAGTTTA AAGAGAAGGACATGGCATTCACTGGGTCAGCGACATTTAGTTACGAGACGTTCATGCTAACCGTTCTGCCGTTCCTTGTAGCATAA
AA sequence Show only first row Show all	>Lus10031049 pacid=23166778 polypeptide=Lus10031049 locus=Lus10031049.g ID=Lus10031049.BGIv1.0 annot-version=v1.0 MADQDGSGFIDDKELQRALSSYNQSFSLRTVHLLMYLFTNTNTRKIGPKEFTQVFYSLQSWRGIFERFDRDRSGKIDANELKEALLSLGFSVSPVVLQLL VSKFDKTGGRNNAIEYDNFIECCLTVKGLTEKFKEKDMAFTGSATFSYETFMLTVLPFLVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10300			Calcium-binding EF-hand family...		Lus10031049 [exp]	0	1
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10016797 [exp]	1.7	0.8257
AT3G53810			Concanavalin A-like lectin pro...		Lus10040774 [exp]	4.1	0.8402
AT3G09032			unknown protein		Lus10027777 [exp]	7.7	0.8229
AT3G22380		TIC	time for coffee (.1.2)		Lus10002447 [exp]	7.9	0.7654
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10021270 [exp]	8.9	0.8304
AT2G22910		NAGS1	N-acetyl-l-glutamate synthase ...		Lus10012093 [exp]	9.9	0.8033
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10032657 [exp]	10.9	0.8119
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	11.7	0.8008
AT3G57810			Cysteine proteinases superfami...		Lus10037002 [exp]	13.2	0.8174
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10004091 [exp]	21.6	0.7103

Compare expression of checked genes

Lus10031049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.