Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57300 2028 / 0 ATINO80 INO80 ortholog (.1.2) AT3G12810 322 / 4e-89 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT5G66750 264 / 3e-74 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT5G18620 267 / 2e-73 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 267 / 2e-73 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT3G06010 258 / 2e-70 ATCHR12 Homeotic gene regulator (.1) AT5G19310 248 / 3e-67 Homeotic gene regulator (.1) AT2G28290 236 / 3e-62 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT2G13370 224 / 8e-59 CHR5 chromatin remodeling 5 (.1) AT2G46020 224 / 1e-58 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035436 [exp] 2539 / 0 AT3G57300 1875 / 0.0 INO80 ortholog (.1.2) Lus10002974 [exp] 296 / 4e-81 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10041735 [exp] 267 / 8e-75 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10033967 [exp] 261 / 4e-70 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10034064 [exp] 250 / 1e-67 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 249 / 2e-67 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10024019 [exp] 242 / 4e-66 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10012798 [exp] 233 / 3e-61 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10009711 [exp] 224 / 9e-59 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043500 [exp] 2284 / 0 AT3G57300 2157 / 0.0 INO80 ortholog (.1.2) Potri.006G047100 [exp] 2258 / 0 AT3G57300 2135 / 0.0 INO80 ortholog (.1.2) Potri.001G207700 [exp] 317 / 2e-87 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.003G022100 [exp] 317 / 2e-87 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.019G129900 [exp] 276 / 2e-78 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 271 / 1e-76 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.008G205600 [exp] 264 / 2e-72 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G091200 [exp] 263 / 7e-72 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G149900 [exp] 263 / 1e-71 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G021400 [exp] 262 / 1e-71 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031050 pacid=23166741 polypeptide=Lus10031050 locus=Lus10031050.g ID=Lus10031050.BGIv1.0 annot-version=v1.0 ATGGCACCGATCCGGCGCACGGTAGCGCATCTTGACGCTTCCCACCGTCTGTCTACACCACAGCCCTTCTTCCCTGCATCTTATCCTACGCACCTTTCTT CTGATCACTCTCCTCCACTCCATCTCCTACTCGACGACGCTGCTCTTACTCAATGGATCGCAGGAGAGAAGCTAACGACTCGCTTTCTTACTCCAACCTC TTCAACCTCGAGGTTTGTGGATTTGTCTTTGATGAACTTCAAAGTCCCACAACCAGATGATGAATTTGATTATTATGGGAATAGTAGTCAGGATGAGAGC AGAGGTAGCCAAGGTGGATCAATGACAAAATATGGCAATGGGAGTGTGACAGAGAAGGATCCAAGTTCAGGGAAGAGAAGGAAGCTGGCTGTGGACAGTG ACGGTGAGGAGGAAGATAGGTCTTACGGGGCTGGTATTACCGAGGAACGATACAGATCGATGTTGGGAGAGCACATTAAGAAGTATAAGAGGAGGTTTAG AGACTCTCCTAGTCCTGCACCTGCTCCTTCTCGAACTGCAGCCATCCCCAAGAATGGTTTGGGAAGTTCGAAAACTAGAAAACTGGGAAACGAGCAGCGA GGTGTACATGATATGGATGTCACATCCGAATGGAAGAATGATGCCACAATCCCTAAGCGTGGGGACCGCACTCGAGATCTTACTTCCAAAATCTTTTACG AGCCTGCTTATCTAGATATTGGGGAGGGTATAACTTATAGGATCCCTCCTTCTTATGACAAGATGGCTGCATCCTTGAATTTGCCTAGCTTATCAGATAT CCGGGTAGATGAAGTTTACTTGGAAGGTACACTTGATTTGGGGTCTTTGGCGCAAATGATGGCCAATGATAAAAGATTTGGTTCTAAGAGCCAAGCAGGA ATGGGAGATCCTCACCCCCAGTATGAATCTCTGCAAGGGAGGTTGAAGGCATTGGCAGCATCTAGTTCTATGCCAAAGTTTAGTCTTAAGATATCTGAGG ATGCTTTGAAGTCTGCCATTCCCGAGGGGGCAGCTGGAAATATAGCACGCTCCATTTTGTCAGATGGTGGTGTGTTGCAGGTTTATTATGTAAAAGTTTT AGAGAAAGGAGACACTTATGAGATTATTGAGCGAAGTTTGCCAAAGAAACCAAAGTTGAAAAAAGATCCCTCTGTGATTGAGAGAGAGGAAATGGAGAGG ATTGGTAAGGTTTGGGTCAACATTGTAAGAAGAGACATACCCAAGCATCATAGGATATTCACTACTTTTCATCGTAAACAATTAATCGATGCGAAGAGGT TTTCAGAAAACTGTCAAAGAGAGGTGAAGTTGAAGGTTAGCAGGTCCCTCAAGCTCATGCGGAATGCTGCCCTACGAACTAGGAAGTTGTCCAGAGATAT GCTGCTATTTTGGAAACGAGTAGATAAGGAGATGGCGGAGGTAAGGAAGAAGGAGGAAAAAGAAGCTGCAGAAGCGTTAAAGCGTGAGCAGGAGCTCCGG GAAGCAAAGAGGCAGCAGCAACGCCTTAATTTCCTCATACAACAAACCGAGCTTTACAGACATTTCATGCAGGACAAGCAAAGTTCACAACCTTCTGAAC CCTTGCCTTTGGAAGATGAGAAACTGGATGCCGAACAAATGGGATTAACCTCTTCCGAAGTTCAACCCGGTGAAGAATCTCCAGAGGATGCTGAGCTGAG AAAGGAAGCTCTGAAGGCTGCTCAAGATGCAGTTTTTAAGCAGAGAAAGTTGACAAGTGCTTTTGATACTGAATGTTCACGGTTGCGGGAGTCAGCTGAT ACTGAAGTAATGCCAACTGACGACTCTGTTGCAGGAGCTAGCCAAATAGATTTACATAACCCGTCGACCATGCCAGTCACATCAACTGTTCAGACACCAA AACTCTTCAACGGTAGTCTAAAAGAATATCAGTTGAAGGGTCTGCAGTGGCTGGTTAACTGTTATGAGCAGGGTTTAAATGGTATACTAGCAGACGAGAT GGGCCTGGGAAAGACTATTCAAGCAATGGCATTCTTAGCTCACCTCGCTGAGGAGAAAAATATATGGGGTCCCTTTTTGGTCGTTGCACCAGCTTCTGTC TTGAATAACTGGGCTGATGAAATAAGTCGTTTTTGCCCTGAGTTGAAAACCTTACCTTACTGGGGAGGCCTCCAGGAGCGTACTATACTTAGGAAGAACA TTAATCCCAAGCGTCTTTATCGAAGAGATGCTGGGTTTCATATTCTCATTACAAGCTATCAATTACTTGTGCTGGATGAGAAGTATTTCCGTCGTGTGAA GTGGCAGTACATGGTACTAGATGAAGCGCAGGCTATTAAAAGCTCCACCAGCATAAGATGGAAGACGCTTCTCAGTTTTAACTGCCGTAACCGCCTACTT CTGACTGGCACACCTATCCAGAATAGTATGGCAGAATTATGGGCACTATTGCATTTTATTATGCCTACATTATTTGATAGTCACGAACAGTTCAACGAGT GGTTTTCAAAAGGGATCGAGAATCATGCAGAACACGGGGGTACTGTAAATGAACACCAGCTTAACAGATTGCATGCAATTTTAAAGCCCTTTATGCTACG TAGACTTAAAGCGGATGTGACTCAAGAGCTCACTAGGAAAACAGAGGTTACAGTTCACTGTAAGTTGAGCTCGCGACAGCAGGCCTTTTATCAAGCTATC AAGAATAAGATATCTCTTGCGGAGTTGTTTGATGGCTCTCGGGGATATATTAACGAGAAGAAACTTATGAACTTGATGAATATAGTGATTCAGCTCCGGA AAGTATGTAACCATCCAGAACTGTTTGAGAGGAATGAGGGAAGTTCGTATCTTTATTTTGGACAGCTTCCAAATACTCTTCTACCTCCTCCATTTGGGGA GTTGGATGACATACACTATCCAGGTGGCCAGAATCCTATTAAGTATAAGATACCAAAGCTGATCAACGACGAGACTGGCCAAAGTTCCAGGGTGCTCCTC TCGACAGCTGCTCCTGGTTTTTACAGAGAATTATTTCTGAAAAAATTTAATATTTTCTCCCCCGAAAATGTTCAAGCTTCTTTACCCGCAGAGACGAACA ATTTGCCTGGATTGTTTTCCAGGAGTGGGGCATTTGGCTTTACCCGTCTGATGGACTTGTCCCCCTCGGAAGTTGCTTTTCTCGCAGCTAGCTCGCTTAT GGAGAAACTGTTGTTTTCTATGATGCGATGGGATCGTCAGTTTCTAGATGGAATCCTCGATGACATTGTAGAAGAGGCGGATGCCAACCTGCTTTGCACT CAGCTTGAAGCAGGAAAAGTAAGGGCCATTTCACGGATGTTACTAATGCCATCCAGATCTCAGACTAGTGTACTAAGAAGGAAACTTGCAACTGGCCCTA CTGATGCCCCATTTGAGGCTTTGATAGTCTCTCATCAAGACAGGCTTTTGTCGAATATTGGAGTCCTTCATTCGACATACACTTTCATCCCAAAAAGTCG AGCTCCACCGATTTCAATCCAATGCTCAGATAGGAATTTCTCTTACAAGATGACTGAAGAACTGCATCAGCCTTGGCTGAAGAGGTTATTAATTGGGTTT GCGCGGACATCTGAACTTAACGGTCCCAGAAAACCAACAGGGCCACATCCCTTAATAGAAGAGATTGATTCTGAAGTGCCAGTTTCTCAACCTGCCCTTC AAGTAATACACGAGATTTTTGGATCGTACCCCCCTATGCAGAGCTTTGATCCAGCCAAGCTACTTACGGATTCTGGGAAGCTACAGACCCTTGATATATT ATTGAAACGCTTGCGTGCGGAGAACCATCGAGTTTTATTGTTTGCACAAATGACGAAAATGTTGAATATTCTTGAGGACTACATGAACTATAGAAAGTAT AGATATCTAAGACTTGATGGGTCATCCACCATTATGGACCGCCGAGACATGGTCAGAGACTTCCAGGACAGGAATGATATTTTCGTGTTCCTGCTGAGTA CTAGAGCTGGTGGAGTGGGTATAAATTTGACAGCTGCAGACACGGTTATCTTCTATGAAAATGATTGGAATCCCACGTTAGATTTGCAGGCAATGGATAG AGCCCATCGGTTGGGTCAGACAAAAGATGTGACTGTCTACCGTCTCATCTGTAAAGAGACGATTGAGGAGAAGATACTGCATCGGGCTAGCCAGAAGAAC ACAGTCCAGCAACTTGTCATGACTGGTGGCCATGTGCAGGGTGATCTCTTAGCTCCTGAAGATGTTGTGTCATTGCTTCTTGATGATCCACAACTGGAGC AGAAACTAAAAGAAGTTCCACTGCAGATGAAAGATAATAAACAAAAGAAGAAACCTACAAGGGCCATCGTGATTGATGCTGAAGGTGACGCAACTCTTGA AGATTTGACTGAACTTGCGACCCAGAATGCGGCAGCAACCGACCCGTCCCAAGATGCTGATAAATCTAAAACAAGTAGCAAAAAGAGGAAAGCTGCAACC GATAAACCGACTCAATCGAGGCCAAGGAACTCAGCAAGGACGACAGAGGCAGGTTCCGCATCCATTGATAATGACACGGATGGTGGGGTATCTGGTTCCG ATCCACTATCAGAAAGAGGCAAGAGGCCCAAGAGACCCAAGAAGAGCGTAAATGAAGCCCTTGAGCCGGCATATGTTGCTTCCCCTAGAGTTGATTCAGC AGCACATACTCTAACCAACAACCTTTGA
AA sequence Show only first row Show all	>Lus10031050 pacid=23166741 polypeptide=Lus10031050 locus=Lus10031050.g ID=Lus10031050.BGIv1.0 annot-version=v1.0 MAPIRRTVAHLDASHRLSTPQPFFPASYPTHLSSDHSPPLHLLLDDAALTQWIAGEKLTTRFLTPTSSTSRFVDLSLMNFKVPQPDDEFDYYGNSSQDES RGSQGGSMTKYGNGSVTEKDPSSGKRRKLAVDSDGEEEDRSYGAGITEERYRSMLGEHIKKYKRRFRDSPSPAPAPSRTAAIPKNGLGSSKTRKLGNEQR GVHDMDVTSEWKNDATIPKRGDRTRDLTSKIFYEPAYLDIGEGITYRIPPSYDKMAASLNLPSLSDIRVDEVYLEGTLDLGSLAQMMANDKRFGSKSQAG MGDPHPQYESLQGRLKALAASSSMPKFSLKISEDALKSAIPEGAAGNIARSILSDGGVLQVYYVKVLEKGDTYEIIERSLPKKPKLKKDPSVIEREEMER IGKVWVNIVRRDIPKHHRIFTTFHRKQLIDAKRFSENCQREVKLKVSRSLKLMRNAALRTRKLSRDMLLFWKRVDKEMAEVRKKEEKEAAEALKREQELR EAKRQQQRLNFLIQQTELYRHFMQDKQSSQPSEPLPLEDEKLDAEQMGLTSSEVQPGEESPEDAELRKEALKAAQDAVFKQRKLTSAFDTECSRLRESAD TEVMPTDDSVAGASQIDLHNPSTMPVTSTVQTPKLFNGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV LNNWADEISRFCPELKTLPYWGGLQERTILRKNINPKRLYRRDAGFHILITSYQLLVLDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLL LTGTPIQNSMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTVNEHQLNRLHAILKPFMLRRLKADVTQELTRKTEVTVHCKLSSRQQAFYQAI KNKISLAELFDGSRGYINEKKLMNLMNIVIQLRKVCNHPELFERNEGSSYLYFGQLPNTLLPPPFGELDDIHYPGGQNPIKYKIPKLINDETGQSSRVLL STAAPGFYRELFLKKFNIFSPENVQASLPAETNNLPGLFSRSGAFGFTRLMDLSPSEVAFLAASSLMEKLLFSMMRWDRQFLDGILDDIVEEADANLLCT QLEAGKVRAISRMLLMPSRSQTSVLRRKLATGPTDAPFEALIVSHQDRLLSNIGVLHSTYTFIPKSRAPPISIQCSDRNFSYKMTEELHQPWLKRLLIGF ARTSELNGPRKPTGPHPLIEEIDSEVPVSQPALQVIHEIFGSYPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKY RYLRLDGSSTIMDRRDMVRDFQDRNDIFVFLLSTRAGGVGINLTAADTVIFYENDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETIEEKILHRASQKN TVQQLVMTGGHVQGDLLAPEDVVSLLLDDPQLEQKLKEVPLQMKDNKQKKKPTRAIVIDAEGDATLEDLTELATQNAAATDPSQDADKSKTSSKKRKAAT DKPTQSRPRNSARTTEAGSASIDNDTDGGVSGSDPLSERGKRPKRPKKSVNEALEPAYVASPRVDSAAHTLTNNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Lus10031050 [exp]	0	1
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Lus10035436 [exp]	1.0	0.9658
AT1G27430			GYF domain-containing protein ...		Lus10011331 [exp]	8.5	0.9316
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	8.7	0.9400
AT3G13225			WW domain-containing protein (...		Lus10010578 [exp]	9.8	0.9148
AT1G02080			transcription regulators (.1.2...		Lus10024660 [exp]	11.0	0.9395
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10038363 [exp]	14.2	0.9251
AT2G47390			Prolyl oligopeptidase family p...		Lus10025026 [exp]	15.9	0.8647
AT3G45830			unknown protein		Lus10036145 [exp]	17.9	0.8831
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	18.3	0.9255
AT3G61690			nucleotidyltransferases (.1)		Lus10004019 [exp]	19.1	0.9129

Compare expression of checked genes

Lus10031050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.