Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41530 473 / 9e-171 ATSFGH ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035437 [exp] 534 / 0 AT2G41530 433 / 6e-155 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1) Lus10042038 [exp] 515 / 0 AT2G41530 478 / 2e-172 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1) Lus10018041 [exp] 81 / 6e-17 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G047000 [exp] 489 / 9e-177 AT2G41530 442 / 2e-158 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00756 [flax] [poplar] Esterase Putative esterase
Representative CDS sequence Show only first row Show all	>Lus10031051 pacid=23166867 polypeptide=Lus10031051 locus=Lus10031051.g ID=Lus10031051.BGIv1.0 annot-version=v1.0 ATGGAGACGAAGCCAAGTGAGATCAGCAGCACCAAGATGTTCGGAGGATACAACAAGAGATTCAAGCATTTCAGCCCCACGCTCGGCTGCTCCATGAACT TCCACGTCTATTTCCCTCCCTCGTCTTCACCTTCCCAGAAATACCCTGTGCTTTACTGGCTATCTGGCTTAACCTGCACGGATGAGAACTTCATAGTAAA GGCAGGAGCTCAACGACTTGCATCGGCTGAGGGTGTTGCTCTGATTGCGCCGGATACATCTCCAAGAGGACTGAATGTGGATGGAGAGTCTGAAAGCTGG GATTTTGGTGTCGGTGCTGGATTTTATCTCAACGCCACACAAGAGAAGTGGAAAAACTGGAAAATGTATGATTATATTGTAAAGGAGCTGCCAACACTTC TGACCGAGAACTTCCCTCAGCTTGATACATCAAGGGCTTCTATATTTGGGCATTCAATGGGAGGCCATGGAGCTTTGACAATCTACTTGAAAAACCTTGA CAAATACAAGTCAGTATCTGCATTTGCGCCCATTTCAAATCCTATGAACTGCCCCTGGGGTCAGAAAGCTTTCACTAATTACCTTGGCAGCAATAAAGCC GACTGGGAGGAATACGATGCTACCTGTCTTGTCTCCAACTCCCGTGATGTATCAGCCACAATCTTAATCGATCAGGGGGAGGACGACAAGTTCCTTCATG ACAAGCAGCTGCTGGTAGACAAGTTCGAGGAGGCGTGTAGGAGTGTGAATGTTCCGTTGCTGCTACGAAGACAGCCATGCTATGATCATTCGTTCTTCTT CATCGCTACTTTCATTGATGATCATATTCGCCACCATGTCCAAGCTCTTAACCTATAA
AA sequence Show only first row Show all	>Lus10031051 pacid=23166867 polypeptide=Lus10031051 locus=Lus10031051.g ID=Lus10031051.BGIv1.0 annot-version=v1.0 METKPSEISSTKMFGGYNKRFKHFSPTLGCSMNFHVYFPPSSSPSQKYPVLYWLSGLTCTDENFIVKAGAQRLASAEGVALIAPDTSPRGLNVDGESESW DFGVGAGFYLNATQEKWKNWKMYDYIVKELPTLLTENFPQLDTSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPISNPMNCPWGQKAFTNYLGSNKA DWEEYDATCLVSNSRDVSATILIDQGEDDKFLHDKQLLVDKFEEACRSVNVPLLLRRQPCYDHSFFFIATFIDDHIRHHVQALNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10031051 [exp]	0	1
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	2.8	0.8648
AT5G27560			Domain of unknown function (DU...		Lus10029929 [exp]	5.1	0.8748
AT5G66005			Expressed protein (.1.2.3)		Lus10035990 [exp]	10.8	0.7950
AT1G55205			unknown protein		Lus10023655 [exp]	11.7	0.7898
AT4G27390			unknown protein		Lus10038584 [exp]	12.4	0.8820
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10042542 [exp]	16.7	0.8659
AT3G60300			RWD domain-containing protein ...		Lus10024759 [exp]	19.1	0.8173
AT3G26580			Tetratricopeptide repeat (TPR)...		Lus10036856 [exp]	19.5	0.8339
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	19.9	0.8228
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10043235 [exp]	21.9	0.8279

Compare expression of checked genes

Lus10031051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.