Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14130 352 / 4e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G14120 314 / 4e-107 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 127 / 5e-34 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G21200 124 / 4e-33 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G52800 122 / 2e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 118 / 1e-30 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G55290 115 / 2e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 115 / 2e-29 ATJRG21 jasmonate-regulated gene 21 (.1) AT1G15550 113 / 6e-29 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT1G78550 112 / 2e-28 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016659 [exp] 122 / 1e-32 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 117 / 4e-30 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 116 / 7e-30 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011980 [exp] 115 / 2e-29 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10023851 [exp] 114 / 3e-29 AT3G19000 474 / 9e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10021002 [exp] 114 / 4e-29 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011979 [exp] 114 / 5e-29 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10030567 [exp] 113 / 7e-29 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10004387 [exp] 113 / 8e-29 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455400 [exp] 383 / 1e-134 AT1G14130 376 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G146600 [exp] 368 / 2e-128 AT1G14130 366 / 6e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176200 [exp] 119 / 3e-31 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 119 / 7e-31 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G033400 [exp] 117 / 2e-30 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176000 [exp] 116 / 2e-30 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G025900 [exp] 117 / 3e-30 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.006G101100 [exp] 116 / 6e-30 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G355100 [exp] 115 / 2e-29 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G176600 [exp] 114 / 3e-29 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10031054 pacid=23166769 polypeptide=Lus10031054 locus=Lus10031054.g ID=Lus10031054.BGIv1.0 annot-version=v1.0 ATGTCCACCGTCCCGATCATAGACTTGACCCAATCGGCGGCGGAGAATCAGCAGCTCTTCCGGGAAGCATGCGAGAGATGGGGCTGTTTCCGACTAGTCA ACCACGGCGTCGAACCAGGACTCATGTTACAGATGAAGAAAGTGGTCAGAGAACTCCTCGACCTCCCCATGGAGATCAAGCAGCGCAATGAAGACGTCAT CCCCGGAAGCGGATACGTCGCTCCTTCGCCCAAGAATCCTCTCTACGACGCTCTCGGCCTCTACGATATGGGCTCTACGGAAGCCGTCCAGGAGTTCTGC GATCAGCTTGACGCCTCTCCTCACCACAGGGAGACGATTCTCAAGTATGCAAAGGAAATCCATGGAGTGGCGATGGAAGTAGCTGCAAGGATGGCGGAGA GTTTCGGAGTTGAGGGCGGAGGTGTTGATTACTTTGACCGATGGCCTTGTCAGTTCAGGATCAACAAGTACAACTTCCAGCCGGAGACGGTGGGATCTCC GGGAGTCCAGATCCATACGGATTCAGGCTTCCTCACCGTTCTCCAGGAGGACGAATCCGTTGGAGGTCTCGAGGTCATGGATCCCTCTGACAATCGCTAC ATCCCTGTCGATCCCGTCCCCGGATCGCTCCTAATCAACCTCGGCGATCTCGCTACTGTGTGGAGCAATGGGAGGTTGAGGAACGTGAAGCACAGGGTTC AGTGCAAGGAAGCTGCGGTTCGGATCTCGATCGCGACATTTCTGCTGGGGCCACCGAGGAACGTGGCAGTGGAGCTTCCGGCGGCGTTTGTGGACGGTGA CCACCCGATGTATCGTCCGATCAGCTACGACGAGCTGCGGTTGCTCCGGCAGAAGACCAATTTGCACGCCGGCGATGTACTGGAGCTGCTGCGGGATCCG CCGCCGTCTTAG
AA sequence Show only first row Show all	>Lus10031054 pacid=23166769 polypeptide=Lus10031054 locus=Lus10031054.g ID=Lus10031054.BGIv1.0 annot-version=v1.0 MSTVPIIDLTQSAAENQQLFREACERWGCFRLVNHGVEPGLMLQMKKVVRELLDLPMEIKQRNEDVIPGSGYVAPSPKNPLYDALGLYDMGSTEAVQEFC DQLDASPHHRETILKYAKEIHGVAMEVAARMAESFGVEGGGVDYFDRWPCQFRINKYNFQPETVGSPGVQIHTDSGFLTVLQEDESVGGLEVMDPSDNRY IPVDPVPGSLLINLGDLATVWSNGRLRNVKHRVQCKEAAVRISIATFLLGPPRNVAVELPAAFVDGDHPMYRPISYDELRLLRQKTNLHAGDVLELLRDP PPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Lus10031054 [exp]	0	1
AT2G40095			Alpha/beta hydrolase related p...		Lus10040195 [exp]	1.0	0.9037
AT1G34750			Protein phosphatase 2C family ...		Lus10020924 [exp]	9.8	0.8780
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10010395 [exp]	22.2	0.8334
AT1G62422			unknown protein		Lus10029957 [exp]	34.1	0.8137
AT1G48960			Adenine nucleotide alpha hydro...		Lus10038945 [exp]	35.7	0.8523
AT1G22540			Major facilitator superfamily ...		Lus10008252 [exp]	37.2	0.8720
AT1G78895			Reticulon family protein (.1)		Lus10033352 [exp]	43.5	0.8740
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10003321 [exp]	44.5	0.8655
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10010005 [exp]	47.4	0.8724
AT1G30540			Actin-like ATPase superfamily ...		Lus10033600 [exp]	48.2	0.8583

Compare expression of checked genes

Lus10031054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.