Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10330 352 / 8e-123 Cyclin-like family protein (.1) AT2G41630 331 / 2e-114 TFIIB transcription factor IIB (.1) AT3G29380 117 / 6e-31 pBRP2 plant-specific TFIIB-related protein 2, Cyclin-like family protein (.1) AT3G57370 86 / 4e-19 Cyclin family protein (.1) AT4G36650 70 / 2e-13 ATPBRP plant-specific TFIIB-related protein (.1.2) AT4G10680 45 / 1e-05 transcription factor IIB (TFIIB) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035440 [exp] 429 / 1e-152 AT3G10330 603 / 0.0 Cyclin-like family protein (.1) Lus10016260 [exp] 290 / 3e-98 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1) Lus10024022 [exp] 68 / 8e-13 AT4G36650 610 / 0.0 plant-specific TFIIB-related protein (.1.2) Lus10041732 [exp] 68 / 1e-12 AT4G36650 605 / 0.0 plant-specific TFIIB-related protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057100 [exp] 345 / 3e-120 AT3G10330 611 / 0.0 Cyclin-like family protein (.1) Potri.006G048400 [exp] 345 / 6e-120 AT3G10330 605 / 0.0 Cyclin-like family protein (.1) Potri.015G067500 [exp] 273 / 1e-91 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1) Potri.017G093100 [exp] 191 / 3e-59 AT3G10330 333 / 1e-114 Cyclin-like family protein (.1) Potri.007G027600 [exp] 66 / 3e-12 AT4G36650 575 / 0.0 plant-specific TFIIB-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00382 [flax] [poplar] TFIIB Transcription factor TFIIB repeat
Representative CDS sequence Show only first row Show all	>Lus10031055 pacid=23166793 polypeptide=Lus10031055 locus=Lus10031055.g ID=Lus10031055.BGIv1.0 annot-version=v1.0 ATGTCTGATAGGCTGGGACTTGTTGCAACTATCAAGGACCGGGCAAATGAGATATTCAAGAGGGTGGAGGATCAAAAGTCTAGCAGAGGAAGAAATCAGG ACGCCTTGCTGGCTGCTTGCCTCTACATTGCTTGTAGGCAAGAGGACAAGCCACGTACTGTCAAGGAAATTTGCTCCGTTGCCAATGGAGCCACAAAGAA GGAAATTGGCAGAGCAAAAGAATACATAGTGAAACAGCTGGGACTGGAGACAGGCCAGTCAGTTGAAATGGGAACTATACATGCTGGAGACTTCATGGTG GGTCATGCTTTAAAAGCATCTTTCCTTGTTGAGTTATGGTTAAATCTCGTATTCTATGGTGTCGGAAGTGGTGTCGGAAGCATCGGTTGTTTTAAATTGC ATAGGCGATTTTGCTCTAATCTTGGTATGACTAACCAAGCAATGAAAGCCGCCCAGGAGTCTGTTCAGAAGTCCGAAGAGTTCGACATAAGGTCAGAAAG AAATCCATGCGCTACAGTTGTAATGGTTGTGACTGCGATTAAGGTTGTTCAGCAGCTTTATAATTTCCCCGGTTTCATGGTTAACAGGAGGAGCCCGATA TCTATCGCAGCAGCAGTTATATACATTATAACGCAACTATCAGATGACAAGAAAGCTCTAAGAGATATATCGCTGGCAACGGGTGTAGCTGAAGGGACGA TAAGGAACTCGTACAAGGATCTGTATCCTCATGTGTCTAAGATCATACCTGGGTGGTATGCTAAGGAAGAGGATCTCAAGAACCTTTCCAGTCCTTAG
AA sequence Show only first row Show all	>Lus10031055 pacid=23166793 polypeptide=Lus10031055 locus=Lus10031055.g ID=Lus10031055.BGIv1.0 annot-version=v1.0 MSDRLGLVATIKDRANEIFKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMV GHALKASFLVELWLNLVFYGVGSGVGSIGCFKLHRRFCSNLGMTNQAMKAAQESVQKSEEFDIRSERNPCATVVMVVTAIKVVQQLYNFPGFMVNRRSPI SIAAAVIYIITQLSDDKKALRDISLATGVAEGTIRNSYKDLYPHVSKIIPGWYAKEEDLKNLSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10330			Cyclin-like family protein (.1...		Lus10031055 [exp]	0	1
AT3G10330			Cyclin-like family protein (.1...		Lus10035440 [exp]	1.0	0.8579
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10008953 [exp]	7.2	0.7951
AT5G14360			Ubiquitin-like superfamily pro...		Lus10022315 [exp]	8.0	0.7805
AT5G27930			Protein phosphatase 2C family ...		Lus10015206 [exp]	8.8	0.7634
AT1G21900			emp24/gp25L/p24 family/GOLD fa...		Lus10041939 [exp]	10.4	0.7841
AT1G16240		ATSYP51, SYP51	syntaxin of plants 51 (.1.2.3)		Lus10002446 [exp]	14.9	0.7643
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10036768 [exp]	17.2	0.7237
AT4G08520			SNARE-like superfamily protein...		Lus10037624 [exp]	17.3	0.7440
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10015273 [exp]	18.2	0.7326
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10013651 [exp]	18.4	0.7314

Compare expression of checked genes

Lus10031055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.