Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41640 540 / 0 Glycosyltransferase family 61 protein (.1.2) AT3G57380 524 / 0 Glycosyltransferase family 61 protein (.1) AT3G10320 510 / 2e-177 Glycosyltransferase family 61 protein (.1) AT2G03370 274 / 3e-86 Glycosyltransferase family 61 protein (.1) AT2G03360 274 / 4e-86 Glycosyltransferase family 61 protein (.1.2) AT3G18170 233 / 3e-71 Glycosyltransferase family 61 protein (.1) AT3G18180 229 / 6e-69 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035441 [exp] 866 / 0 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018048 [exp] 602 / 0 AT2G41640 569 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018046 [exp] 535 / 0 AT3G10320 530 / 0.0 Glycosyltransferase family 61 protein (.1) Lus10042043 [exp] 325 / 9e-108 AT3G10320 335 / 1e-112 Glycosyltransferase family 61 protein (.1) Lus10031058 [exp] 297 / 3e-89 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10036806 [exp] 275 / 2e-86 AT2G03370 381 / 4e-129 Glycosyltransferase family 61 protein (.1) Lus10042044 [exp] 249 / 1e-74 AT2G41640 257 / 4e-78 Glycosyltransferase family 61 protein (.1.2) Lus10036003 [exp] 244 / 1e-73 AT3G18180 360 / 2e-119 Glycosyltransferase family 61 protein (.1) Lus10016707 [exp] 238 / 3e-71 AT3G18180 367 / 3e-122 Glycosyltransferase family 61 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048500 [exp] 605 / 0 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.016G057000 [exp] 588 / 0 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.010G162200 [exp] 285 / 2e-90 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 259 / 5e-80 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 256 / 3e-79 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2) Potri.015G042300 [exp] 249 / 3e-75 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.012G051500 [exp] 244 / 3e-73 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 233 / 2e-69 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [flax] [poplar] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Lus10031057 pacid=23166852 polypeptide=Lus10031057 locus=Lus10031057.g ID=Lus10031057.BGIv1.0 annot-version=v1.0 ATGGGTCTGCACCGTCATAATCACCATCAGCTGTTGCTAGAGCAGGACGAGCAGGTGGGCGCCGGCGGAGGAGGAGGAGGAGGAGTCAGGGGCCTTGTTC TTGTCTTCACTAACAACAACAACTCCAAGAAACCATCAACCACAGTAATCACAACAAGAAGAACCAAGCTCATCTCTCTGCTCTTCTTCTCCCTTTCCCT CCTCTCCTTCTTCATCATCCTCTCCCCTTACTACTTCCCCTCCTTGTGTAAGTTCAAGCTCAATCTCTTCCTCCGTTTCTTGCACATGTTCTTGTTCATC TTCTCTCTTTATCTGACTCGCTTATCCCTGTTCGTATATGCAGACTCTCTTGCAGATGTGGACTCAAACGATCTCCCGCCTCCTTGTTCATCAGTCCAGA ACGGAACAATCTGCTGCGACAGAACCAGCAGCATTCGTACAGACGTATGCACCATGAGAGGAGATATCAGGACTCAGTCCTCCTCTTCTTCAATCTTCCT CTACACATCTATGGCGGATGATGATGGCCACTCAACAATAGTTCCACCAATACATGAGAACATCAGGCCTTACACTAGGAAATGGGAGACCAGCGTCATG AACACCATCGACGAGATCCACCTGGTTCAAACAAACAAACAACAGAAACAACACCATTGTGATGTTAAGCATGAAGTTCCGGCGGTGTTCTTCTCCACGG GAGGGTACACAGGGAACGTCTACCACGAATTCAACGACGGGATTCTCCCTCTCTACTTGACGTCGCACAGATTCAACAAGAAAGTCGTGTTCGTCATCCT TGAGTACCATCCATGGTGGATTACCAAATACTCCGACGTCCTCTCCGAGCTTTCCGACTACCCCGCCGTGGACTACTCTGGCGACAACAGGACCCACTGC TTTACCGAAGCAATCGTTGGACTCAAAATCCACGACGAGCTGTCGATCAATCCTGCTGCTCTCCTCAACGAAAGCGAGACGAACATCGTCGATTTCCACA ACCTCCTCGATCGAGCCTACGCGCCTCGAATCAAATCCATAATCGAGGACGAACAACGACAGGAAGAAGCTTCCGGAAGCCCTAACTCTCCACAACTCGA TCAACAACAACAACAACAAATACAACGTCCAAAACTGGTGATCGTGTCCCGAAACGGATCGAGGTCGATAACTAACGAGGACACTTTAGCCAAATTGGGG GAAAAGATAGGGTTCCGAGTGGAAATTCTAAGACCTGACCCAACGACGGAGCTGGCGAAGATCTACAGATCGATGAACTCGAGCGACGTGATGATCGGAG TGCACGGAGCAGCGATGACGCACTTCCTGTTCATGAGGCCAGGGTGCGGTTTCATCCAGGTGGTTCCACTCGGTACAGAGTGGGCGGCGGATAGCTACTA CGGCGAGCCAGCAAGGAAGATGGGGCTGAAGTATATCGGCTACAGAATCCTTCCGAAGGAGAGCTCTCTGTACGACAAGTACCAGAAGGACGACCCCGTA CTCCAAGATCCGGAGAGCGTTTCGCAGAAGGGGTGGGAGTATACGAAGAAGATCTATCTGGATAGTCAGAACGTGAAGCTTGATCTTAGAAGGTTTAAGA AGAGGCTGCAGAAGGCTTATGGACTCGCCGTCGCTAAAAGGTCGGAGAATTAG
AA sequence Show only first row Show all	>Lus10031057 pacid=23166852 polypeptide=Lus10031057 locus=Lus10031057.g ID=Lus10031057.BGIv1.0 annot-version=v1.0 MGLHRHNHHQLLLEQDEQVGAGGGGGGGVRGLVLVFTNNNNSKKPSTTVITTRRTKLISLLFFSLSLLSFFIILSPYYFPSLCKFKLNLFLRFLHMFLFI FSLYLTRLSLFVYADSLADVDSNDLPPPCSSVQNGTICCDRTSSIRTDVCTMRGDIRTQSSSSSIFLYTSMADDDGHSTIVPPIHENIRPYTRKWETSVM NTIDEIHLVQTNKQQKQHHCDVKHEVPAVFFSTGGYTGNVYHEFNDGILPLYLTSHRFNKKVVFVILEYHPWWITKYSDVLSELSDYPAVDYSGDNRTHC FTEAIVGLKIHDELSINPAALLNESETNIVDFHNLLDRAYAPRIKSIIEDEQRQEEASGSPNSPQLDQQQQQQIQRPKLVIVSRNGSRSITNEDTLAKLG EKIGFRVEILRPDPTTELAKIYRSMNSSDVMIGVHGAAMTHFLFMRPGCGFIQVVPLGTEWAADSYYGEPARKMGLKYIGYRILPKESSLYDKYQKDDPV LQDPESVSQKGWEYTKKIYLDSQNVKLDLRRFKKRLQKAYGLAVAKRSEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41640			Glycosyltransferase family 61 ...		Lus10031057 [exp]	0	1
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029759 [exp]	1.7	0.9857
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10009037 [exp]	4.4	0.9622
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Lus10038515 [exp]	4.5	0.9753
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	6.6	0.9774
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10029862 [exp]	7.1	0.9494
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006701 [exp]	9.2	0.9752
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	10.5	0.9761
AT3G05550			Hypoxia-responsive family prot...		Lus10020658 [exp]	10.6	0.9652
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Lus10029849 [exp]	11.0	0.9684
AT1G58420			Uncharacterised conserved prot...		Lus10012496 [exp]	11.4	0.9599

Compare expression of checked genes

Lus10031057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.