Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10310 869 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G47500 559 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 555 / 1e-180 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 468 / 4e-147 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 453 / 1e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G44730 451 / 5e-140 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT5G41310 442 / 6e-138 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G18410 446 / 7e-138 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63640 444 / 1e-137 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT1G72250 277 / 4e-77 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035442 [exp] 1776 / 0 AT3G10310 864 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10018049 [exp] 1328 / 0 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 1321 / 0 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10009851 [exp] 549 / 2e-178 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10015212 [exp] 539 / 1e-175 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032264 [exp] 459 / 2e-142 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 454 / 2e-140 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10029865 [exp] 444 / 5e-138 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10001306 [exp] 443 / 1e-137 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048650 [exp] 663 / 0 AT3G10310 503 / 2e-169 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.005G021100 [exp] 590 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 583 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 582 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 578 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.001G467600 [exp] 559 / 1e-180 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 457 / 3e-142 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.006G048600 [exp] 436 / 6e-141 AT3G10310 395 / 1e-127 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G104000 [exp] 451 / 3e-140 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 435 / 7e-134 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10031058 pacid=23166777 polypeptide=Lus10031058 locus=Lus10031058.g ID=Lus10031058.BGIv1.0 annot-version=v1.0 ATGGAGGACCGTTCTACAACTGGATTTTACGACGTCTTGGCTTCAAGAAAAGCCGAGGAAGCTGTCTGTAGGCGTTGCCAAGCAACTGAGTGGCTGGAAA GTGTGGTGGGACCTTTGGGCATATCGAGTCGTCCATCGGAGAAAGAATTCATTTCTCGCTTGAGAAATGGATTGATCCTCTGCAACGCCATTAACAAAGT TCATCCAGGAGCGGTAACTAAGGTGTGGTCAAATGCTTCGAGTCGAATTTCTTTTGAATGTGGTGCATTGGTTGTGGAGACTCATGTGCCTATGCAATCT CTGGCTAGAGAATCCCAGCCATTGCCGGCTTATCAGTATTTTGAGAATGTTCGGAACTTTCTGGTAGCTATGGAGGATTTGAGACTTCCAGCATTTGAAG CTTCTGATATAGAAAGGGATACGTTGGAAGCAGGATCAACTGCTAAGGTGGTTGATAGCATATTAGCGCTGAAGTCATACCATGAGCATAAGAACGCGAC TGGTGGGAATGGGGCTTTCAAGTCTGTAAGGTCTCCAGTGGTTGTGCATAGCGGTAGTAGGAACAATCTCCAAGGATTATCGACAGATCCTTGTCGGCGG TTGGAAATGAACGTAGCGGCTGAGGCACATCCATCTGAGAATGCGGAATTTCAGAAACTCCAAGATGTACTGGTGAAGGCACTTGCAGACTACATGGTTG ATGCAAAAGAAAACATGGGTGACAACTTTTTCGCCTCCTTCCATTCTGGGGATGTGGATCCAATGAGACTGTTCGGAAGGATTGTTGCAAGTTGTTTAAA TGAGAATATGCAGAAAAAGTTTCCTGAGGGCCTAGCAGTGTCCAAAGATTGCCTGAAAGACAGTAGTAACTTGCCTGCATATTTGGAAACAACTCCATTG GAGGAAATATCAGAAAACAGAACGAGCAAGTGTTGTCAGACTTGCTTAATAGAAGGGAGCTGCAATCAAAAGCGTTTATTGAAAATTCAGGAAAGAGAAC TCCAGGATTTGAAGATCTTGTTGACCACAATTAAGAAGGAATTTCAAGGCTTGCAATCCCAGTTGCAGGACGATCTGAGACACTATGGCATTCGTGTCCA AGAGATGGCTACTGCTGCTCAGGGATATCACAAAGTGTTGAAAGAAAACCGGTTATTATACAATATGGTTCAGGATTTGAAAGGAAATATTCGAGTTTAC TGTAGAGTGCGGCCTTCATTTACTACTGGAGCAAGCAATGCAGTTGAATTTGTTGGAGACGATGGTTCACTTGTCATTATAGATCCATCAAAGCCCGCAA AAGATGGAAGGAGACATTTTCAGTTTAATCAGGTGTTTGGCCCTACAGCCTCTCAAGGGATCGTGTTCGACCATGTCCAATCCTTAATCCGATCTGTGAT GGATGGCTACAATGTATGCATTTTTGCATACGGCCAAACTGGCTCTGGGAAAACGTATACAATGAGTGGTCCACCAGGTGGATCAACCAAGGAGTTGGGA ATAAATTACTTGGCCCTCGATGATCTTTTCCAAATTTGTTCTGGGGAAGATGGTCTCACTCTGCCTGATGCTACGATGCTTCCTGTGACATCTACCTGTG ATGTTCTTGAACTGATGAAACTTGGAGAGGTGAATCGTGTTGTCAGTTGTACTGCAATGAACAACCGGAGCAGTCGTTCACACAGTGTCCTGACAGTTCA TGTACATGGGAAAGATGAGTCTGGAGCCAATCTTAGAGGCTGCCTGCATTTGGTGGACTTAGCAGGAAGTGAAAGAGTGGACAAATCAGAAGTGACCGGG GATCGGCTCAAGGAAGCTCAATATATCAATAAGTCGCTCTCATGCCTTGGAGATGTAGTCACTGCATTGGCACAGAAGAATTCCCACATCCCATACAGAA ACAGCAAACTTACACTTCTGTTGCAAGATTCCTTAGGTGGACATGCTAAAACACTGATGTTTGCTCATGTGAGTCCAGAAGAAGACTCTGTATCGGAGAC TGTCAGCACTTTGAAGTTTGCTCAAAGGGTATCAACCGTTGAGCTTGGTGCTGCTCATGCAAACAAAGAGAGCAGTGAAATTATCCAACTCAGGGAGCAG GTTGAGAACCTCAAAAGGGCACTAGCTAATAAACAGTCGCAAGATCAGCAGATTCAAAAGGTAAACAGTGAAGTAAGATCTCCATTAGGGAAATTGAAGG GGACGAATGATAAAACCCCTCCTCGGCCAAGGAGACTCAGTATAGAGAGTAGCAGCGGCAAGCTGACCAAGACTACAGGCATGGAAGATAGGAATGCATC GGGAACACCTTCACTGCCTGTTCGTTCTCGAAGGCTAAGTCTGGAAGCTCCATCATACTATAAGAGGGAACATTTCCAGACAAAAGTAGCAGTAGCAGCA AATGAGGAAATAATAAGAAAGCCCCTGCCATTTGAATCTACAATGAAGACACCAAAGAAGTACAACCAGTCACAGGATGTGGAGGCCGTATCGAAGCCTT CATTTGGGTACTCTACTAGCTCGACGATGAAGATATATCAACACATTCCTCCGAAAAGTCCCACTAGATGTCTGTATCAAACGGTCAGGATAGACAGTAG AACACAAATTCCTCATCTGCAGGTGCCATCACAGACAACAACAGAACACCCGGTTCTTGCCACAAATGCGGTCCAGATCCTGACACAAACCGGAGCTCCC ATTTCTGCGGCGAGTACTGGCAAAGGGTCTCAGTTTAGGAAGTCGATTCGGAACATTGGGAAGCTGATCAATGGTTTTGATAAGAGGAATCCAATCAAAG GCAATGAAGGGATTATCAAGTCACCAATTGGCAGTAATAGTAGCAGAAGCGGTTCTAGAGCAGCAAGGAGACAATCACTGACTGGAGTTTACAAGTCTCA GACGTCTTCTTCCCTTGGAGTTGATTTGGAATATCAACCAATATCACCTACGTATAGCCCGCCGCTAATTCTCCGACCTTTTAGCGACGGCGAGTCCATA AGCCTTCTGCAGCCTCTTCTTAAACCTTCTAAGATCAAGCTTCACGTTCTGACTATCCAGATAGATCTTCTTCGTATACTCCCACCCCTTCTGCGAAACG CTCTCCGGATCTTGGAGTACGGGGTCGTCCTTCTGGTACTTGTCGTACAGAGAGCTCTCCTTCGGAAGGATTCTGTAGCCGATATACTTCAGCCCCATCT TCCTTGCTGGCTCGCCGTAGTAGCTATCCGCCGCCCACTCTGTACCGAGTGGAACCACCTGGATGAAACCGCACCCTGGCCTCATGAACAGGAAGTGCGT CATCGCTGCTCCGTGCACTCCGATCATCACGTCGCTCGAGTTCATCGATCTGTAGATCTTCGCCAGCTCCGTCGTTGGGTCAGGTCTTAG
AA sequence Show only first row Show all	>Lus10031058 pacid=23166777 polypeptide=Lus10031058 locus=Lus10031058.g ID=Lus10031058.BGIv1.0 annot-version=v1.0 MEDRSTTGFYDVLASRKAEEAVCRRCQATEWLESVVGPLGISSRPSEKEFISRLRNGLILCNAINKVHPGAVTKVWSNASSRISFECGALVVETHVPMQS LARESQPLPAYQYFENVRNFLVAMEDLRLPAFEASDIERDTLEAGSTAKVVDSILALKSYHEHKNATGGNGAFKSVRSPVVVHSGSRNNLQGLSTDPCRR LEMNVAAEAHPSENAEFQKLQDVLVKALADYMVDAKENMGDNFFASFHSGDVDPMRLFGRIVASCLNENMQKKFPEGLAVSKDCLKDSSNLPAYLETTPL EEISENRTSKCCQTCLIEGSCNQKRLLKIQERELQDLKILLTTIKKEFQGLQSQLQDDLRHYGIRVQEMATAAQGYHKVLKENRLLYNMVQDLKGNIRVY CRVRPSFTTGASNAVEFVGDDGSLVIIDPSKPAKDGRRHFQFNQVFGPTASQGIVFDHVQSLIRSVMDGYNVCIFAYGQTGSGKTYTMSGPPGGSTKELG INYLALDDLFQICSGEDGLTLPDATMLPVTSTCDVLELMKLGEVNRVVSCTAMNNRSSRSHSVLTVHVHGKDESGANLRGCLHLVDLAGSERVDKSEVTG DRLKEAQYINKSLSCLGDVVTALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPEEDSVSETVSTLKFAQRVSTVELGAAHANKESSEIIQLREQ VENLKRALANKQSQDQQIQKVNSEVRSPLGKLKGTNDKTPPRPRRLSIESSSGKLTKTTGMEDRNASGTPSLPVRSRRLSLEAPSYYKREHFQTKVAVAA NEEIIRKPLPFESTMKTPKKYNQSQDVEAVSKPSFGYSTSSTMKIYQHIPPKSPTRCLYQTVRIDSRTQIPHLQVPSQTTTEHPVLATNAVQILTQTGAP ISAASTGKGSQFRKSIRNIGKLINGFDKRNPIKGNEGIIKSPIGSNSSRSGSRAARRQSLTGVYKSQTSSSLGVDLEYQPISPTYSPPLILRPFSDGESI SLLQPLLKPSKIKLHVLTIQIDLLRILPPLLRNALRILEYGVVLLVLVVQRALLRKDSVADILQPHLPCWLAVVAIRRPLCTEWNHLDETAPWPHEQEVR HRCSVHSDHHVARVHRSVDLRQLRRWVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10310			P-loop nucleoside triphosphate...		Lus10031058 [exp]	0	1
AT5G67610			Uncharacterized conserved prot...		Lus10019263 [exp]	3.2	0.9068
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10019042 [exp]	4.9	0.9120
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	6.6	0.9002
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10023718 [exp]	9.2	0.8834
AT1G05910			cell division cycle protein 48...		Lus10027038 [exp]	13.5	0.8874
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038291 [exp]	15.0	0.8678
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	15.2	0.8938
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	15.7	0.8964
AT2G04235			unknown protein		Lus10025175 [exp]	19.6	0.8993
AT2G04235			unknown protein		Lus10016054 [exp]	20.1	0.9038

Compare expression of checked genes

Lus10031058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.