Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41660 226 / 1e-72 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT5G23100 179 / 2e-54 Protein of unknown function, DUF617 (.1) AT3G25640 170 / 2e-51 Protein of unknown function, DUF617 (.1) AT5G06990 162 / 2e-48 Protein of unknown function, DUF617 (.1) AT2G37880 149 / 1e-43 Protein of unknown function, DUF617 (.1) AT2G21990 144 / 2e-41 Protein of unknown function, DUF617 (.1) AT4G39610 144 / 2e-41 Protein of unknown function, DUF617 (.1) AT5G42680 135 / 5e-38 Protein of unknown function, DUF617 (.1.2) AT1G21050 130 / 6e-36 Protein of unknown function, DUF617 (.1) AT1G76610 123 / 9e-34 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035443 [exp] 464 / 4e-166 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 183 / 2e-56 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 179 / 1e-54 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 179 / 2e-54 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 176 / 9e-54 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10009615 [exp] 164 / 9e-49 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1) Lus10042046 [exp] 157 / 7e-46 AT2G41660 170 / 3e-51 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10018050 [exp] 156 / 2e-45 AT2G41660 171 / 1e-51 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10021759 [exp] 149 / 3e-43 AT5G42680 254 / 3e-85 Protein of unknown function, DUF617 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048800 [exp] 220 / 9e-71 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 214 / 3e-68 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 190 / 6e-59 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.015G053000 [exp] 189 / 9e-59 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 188 / 1e-58 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 182 / 7e-56 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 161 / 7e-48 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 159 / 4e-47 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 155 / 8e-46 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.002G002000 [exp] 149 / 2e-43 AT1G21050 236 / 1e-78 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10031059 pacid=23166870 polypeptide=Lus10031059 locus=Lus10031059.g ID=Lus10031059.BGIv1.0 annot-version=v1.0 ATGGCGCTCCAGAGCAACAAGATCTCCCCTTCATCCTCCTTATCCCCTTACTCCAACTACTACACCATCACCATGCTCTCTCGTTCCTCCTCCGCCACGT CATCCTCCCGCCCTCCTCCCATCCCTGAAAACGACATCATCATAGTTCCCACCCGCAACTCCACCTCCGACCAGCTTCTCCTCGCCGTCCGGTCACCGTC TCCGACCACCACCAAGTATTATTACAAACACTTCAAGCTCCCCTCACTCCTACGCACAATCCTCAAAGCTCTCTCTTCCCCTTACACACTCCTCATCCCG CCGGCCGCCCGTCAATGGATGGCGTCATCCAAGCCGTCCATATCTCCAGTCTCCACGGAGCTGATTAGGGCGACCACATCCGCCACACGCGGGCTGGGGA GGAAGGTGACGGGCACGCTCTACGGGTACAAAAGGGGCCACGTGACGTTTGCGGTTCAGACCGACTCGCGGTCCGAACCGGTTTTCCTGATCGAGCTGGC CGTCTCGACGGCCTCCCTGGTTAAGGAGATGTCGTCCGGTTTGGTCCGGATAGCGCTCGAGTGCGAGAAGTCAAGGTCAACGGTTGGGAATAAGCTGTAT GAGGAGCCGGTGTGGAGCATGTACTGCAACGGGAGGAAGTGTGGGTACGCGACGGCGCGTGAGAGGTGTAATAAAGTTGACACGCGCGTGCTCACCACGG TGCGGACTGTTTCGGTCGGGGCAGGGGTGATTCCTCCTGTTGCGGCGCTGGAGGACGGCGGAGGGAAGGAAACGAGGACAACGACGTCGTTTGGAGGGGA GATGATGATGGGTGAGTTGATGTATATGAGGGCTAAGTTTGAGAGAGTGGTTGGGAGCCGTGACTCGGAGGCGTTTTACATGATGAATCCTGACGGTAAC GGTGGTCCAGAGCTGAGTCTGTTTCTTCTCCGGCTGTGA
AA sequence Show only first row Show all	>Lus10031059 pacid=23166870 polypeptide=Lus10031059 locus=Lus10031059.g ID=Lus10031059.BGIv1.0 annot-version=v1.0 MALQSNKISPSSSLSPYSNYYTITMLSRSSSATSSSRPPPIPENDIIIVPTRNSTSDQLLLAVRSPSPTTTKYYYKHFKLPSLLRTILKALSSPYTLLIP PAARQWMASSKPSISPVSTELIRATTSATRGLGRKVTGTLYGYKRGHVTFAVQTDSRSEPVFLIELAVSTASLVKEMSSGLVRIALECEKSRSTVGNKLY EEPVWSMYCNGRKCGYATARERCNKVDTRVLTTVRTVSVGAGVIPPVAALEDGGGKETRTTTSFGGEMMMGELMYMRAKFERVVGSRDSEAFYMMNPDGN GGPELSLFLLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10031059 [exp]	0	1
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	3.7	0.9079
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	4.9	0.9200
					Lus10003852 [exp]	6.9	0.9011
					Lus10038309 [exp]	8.7	0.8836
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	11.0	0.9051
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	11.1	0.9043
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	12.2	0.9033
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10002930 [exp]	13.2	0.8482
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	14.7	0.8995
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	17.9	0.8983

Compare expression of checked genes

Lus10031059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.