Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41670 489 / 7e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G10650 196 / 4e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02790 103 / 1e-24 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT3G07050 53 / 2e-07 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT1G52980 49 / 3e-06 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006578 [exp] 206 / 4e-63 AT4G10650 394 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014654 [exp] 191 / 2e-57 AT4G10650 383 / 2e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006927 [exp] 105 / 1e-25 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10014672 [exp] 103 / 4e-24 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10028574 [exp] 56 / 2e-08 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018881 [exp] 56 / 4e-08 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10021017 [exp] 43 / 0.0004 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10023835 [exp] 42 / 0.0007 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048900 [exp] 540 / 0 AT2G41670 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G083100 [exp] 199 / 1e-60 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G209900 [exp] 100 / 2e-23 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.002G241100 [exp] 52 / 6e-07 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.001G402500 [exp] 47 / 1e-05 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10031060 pacid=23166792 polypeptide=Lus10031060 locus=Lus10031060.g ID=Lus10031060.BGIv1.0 annot-version=v1.0 ATGGGTAGAGGATTGAAGGGTGTCCTGAAGAAAGGATTAGGGCAAATGCTGTTCAACACGGAAGGCGGAGTTGTCAACTGGTTCCCTGGCCATATGGCCG CCGCCACCCGCGCCATTCGCCAGCGGCTCAAGGTTTCCGACCTCGTAATCGAAGTCCGAGACTCTCGTATACCGTTGTCGTCTGTGAACGCGGATTTGCA GCCACAGCTTCTGAACAAGCGGAGGGTGATTGCTCTTAACAAGAAGGACTTGGCGAACCCCAATATAATGCATAAATGGGTTGGTTATTTTGAATCATGC AAGCAGGACTGCATATTTATCAACTCACATAGCAAGAACTCTGTCCAGAAGCTTCTGGAACTAGTGGAGTTCAAACTGAAGGAAGTGATTTCAAGGGAGC CTACTCTCCTTGTTATGGTAGTTGGTGTTCCTAATGTTGGGAAATCCGCTCTGATAAATTCAATCCGCCAAATCGCCTTGACTCGGTTTCCTGTTGACAA AATTAAACGAGCTACAGTGGGTCCTTTGCCTGGTGTTACACAAGATATCGCAGGATACAAGATCGCTCATCAACCTAGCATATACGTTCTTGATACCCCA GGCGTGTTGGTTCCCAGTATTCCTGATATAGAAACAGGGCTTAAGCTAGCTCTTGCAGGATCAGTAAAAGACTCGGCTGTTGGCGAGGAGCGCATTGCTC AATACTTGTTGGCAGTCCTAAACATCCGGGGCACTCCCCTTCACTGGAAGCATTGGAACAACAGGAAAATGGACGGGATCAAATACGAAGCGCAGGATAA TCGTAGCTACACTCTTAAAGATCTTCGACAAAAGAGAAGGAACCAACCTAACTTCTCCGATCTGATCTATATCGATGATATAGTGACGGAAGTGCAATGT GCTCTATATCGAACCCTGACCGAGTTTGATGGAAATGTGGAGGAAGAGAATGGGTTGGAGAACCTTATAGAAGAGCAGTTTGGAGCATTACAGAAGGCGA TGAAGATCCCACATAAAGCTTCGGAAGCTCGATTGATGGTGTCGAAGAAGCTTCTCACTCTGTTCAGAACGGGGAAGCTAGGGCCTTTTATCCTTGATGA TGTTCCAGACTACTAG
AA sequence Show only first row Show all	>Lus10031060 pacid=23166792 polypeptide=Lus10031060 locus=Lus10031060.g ID=Lus10031060.BGIv1.0 annot-version=v1.0 MGRGLKGVLKKGLGQMLFNTEGGVVNWFPGHMAAATRAIRQRLKVSDLVIEVRDSRIPLSSVNADLQPQLLNKRRVIALNKKDLANPNIMHKWVGYFESC KQDCIFINSHSKNSVQKLLELVEFKLKEVISREPTLLVMVVGVPNVGKSALINSIRQIALTRFPVDKIKRATVGPLPGVTQDIAGYKIAHQPSIYVLDTP GVLVPSIPDIETGLKLALAGSVKDSAVGEERIAQYLLAVLNIRGTPLHWKHWNNRKMDGIKYEAQDNRSYTLKDLRQKRRNQPNFSDLIYIDDIVTEVQC ALYRTLTEFDGNVEEENGLENLIEEQFGALQKAMKIPHKASEARLMVSKKLLTLFRTGKLGPFILDDVPDY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41670			P-loop containing nucleoside t...		Lus10031060 [exp]	0	1
AT5G66960			Prolyl oligopeptidase family p...		Lus10017568 [exp]	1.0	0.9036
AT3G61700			Plant protein 1589 of unknown ...		Lus10019011 [exp]	6.5	0.8992
AT4G37190			unknown protein		Lus10001001 [exp]	7.7	0.8755
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10036607 [exp]	8.6	0.9006
AT3G46210			Ribosomal protein S5 domain 2-...		Lus10037991 [exp]	10.6	0.8898
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	13.0	0.8881
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10009236 [exp]	13.4	0.8771
AT2G43110			unknown protein		Lus10001158 [exp]	19.1	0.8889
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10010990 [exp]	24.0	0.8856
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10022906 [exp]	25.0	0.8604

Compare expression of checked genes

Lus10031060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.