Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45120 57 / 8e-10 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 57 / 1e-09 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 52 / 6e-08 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G27730 49 / 3e-07 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT3G46090 48 / 4e-07 C2H2ZnF ZAT7 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G19580 47 / 2e-06 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT2G28200 47 / 2e-06 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G04340 45 / 6e-06 C2H2ZnF ZAT6, CZF2, C2H2 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) AT2G37430 45 / 7e-06 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G61470 45 / 9e-06 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031166 [exp] 56 / 3e-09 AT1G02030 72 / 1e-14 C2H2-like zinc finger protein (.1) Lus10023912 [exp] 56 / 3e-09 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10015740 [exp] 54 / 2e-08 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10028951 [exp] 53 / 4e-08 AT3G60580 117 / 1e-30 C2H2-like zinc finger protein (.1) Lus10015888 [exp] 50 / 3e-07 AT3G60580 126 / 3e-35 C2H2-like zinc finger protein (.1) Lus10004724 [exp] 50 / 4e-07 AT3G60580 108 / 2e-27 C2H2-like zinc finger protein (.1) Lus10040425 [exp] 49 / 4e-07 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10038929 [exp] 49 / 7e-07 AT1G02030 101 / 2e-25 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 47 / 6e-06 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G125900 [exp] 69 / 5e-14 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 59 / 2e-10 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 58 / 7e-10 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.008G032300 [exp] 56 / 2e-09 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.002G119300 [exp] 51 / 1e-07 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.003G077200 [exp] 50 / 4e-07 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 49 / 5e-07 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.014G066200 [exp] 49 / 6e-07 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.002G143600 [exp] 47 / 2e-06 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.001G295500 [exp] 45 / 9e-06 AT1G27730 144 / 2e-42 salt tolerance zinc finger (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031061 pacid=23166878 polypeptide=Lus10031061 locus=Lus10031061.g ID=Lus10031061.BGIv1.0 annot-version=v1.0 ATGAGATCCAAGAAGCAGTGTCCCGAAATATCATCAACGCCGTCCACCCCCACCACCACCATGTTGAATAATGATGGTAATGTGATTTTGTGTTTAGTCG TGAATGTTTCTCAGGATTGTCCGGAAGACAAAGGGAAAGAACTAGTGGAGCCAGCTGAGAAGGCAGAGAAGAAGAAAGATGAAGGCGAGTCTTCCAGGCC GATCAGGAAAGGCAGGTATAAGTGTGACAAGTGTTTGAAGAAGTTCAGCTTCTATCAAGCGTTGGTCGCTCATCGTGCTAGCCAACACAAAAAGAAGGAC AAGGACCAGGTTGAGATCGACGATGCTGGAGGAGGAGAAAGACACGTCATGAAAAAAGGATGTCGTGGTAGTGGTGGGGCCCAAGCGACTCAGAAGAAGA AGAGGGTATTCACGTGTCCTTCTTGTTCCGAGGTTTTCCGCTCTGGTGTAGCGCTCGGTGGTCACAAAAGGGTGGTTCATTCATCCACTCCTGTTGTGAC CGAACCAATAACAGTTGTTGGGGAGGAACAAGAGAAGATAACGTCTTCTCGAAGGATCGCAATAGATCTGAATTTGCCACCTCCAATTGATGATGATGAT GTTGATGAGTGA
AA sequence Show only first row Show all	>Lus10031061 pacid=23166878 polypeptide=Lus10031061 locus=Lus10031061.g ID=Lus10031061.BGIv1.0 annot-version=v1.0 MRSKKQCPEISSTPSTPTTTMLNNDGNVILCLVVNVSQDCPEDKGKELVEPAEKAEKKKDEGESSRPIRKGRYKCDKCLKKFSFYQALVAHRASQHKKKD KDQVEIDDAGGGERHVMKKGCRGSGGAQATQKKKRVFTCPSCSEVFRSGVALGGHKRVVHSSTPVVTEPITVVGEEQEKITSSRRIAIDLNLPPPIDDDD VDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10031061 [exp]	0	1
AT1G26380			FAD-binding Berberine family p...		Lus10021289 [exp]	1.0	0.9209
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	8.2	0.8316
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034232 [exp]	9.0	0.7631
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	9.6	0.8227
					Lus10005828 [exp]	11.3	0.7443
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	12.8	0.8133
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	14.1	0.8133
					Lus10040955 [exp]	15.2	0.7512
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	15.2	0.8133
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	16.7	0.8112

Compare expression of checked genes

Lus10031061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.