Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65650 477 / 1e-170 UCH2 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) AT5G16310 436 / 1e-154 UCH1 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) AT4G17510 66 / 2e-12 UCH3 ubiquitin C-terminal hydrolase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035444 [exp] 593 / 0 AT1G65650 494 / 1e-177 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10042047 [exp] 538 / 0 AT1G65650 484 / 8e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10020144 [exp] 84 / 8e-19 AT4G17510 349 / 2e-123 ubiquitin C-terminal hydrolase 3 (.1) Lus10026940 [exp] 72 / 1e-13 AT4G17510 327 / 4e-108 ubiquitin C-terminal hydrolase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075200 [exp] 528 / 0 AT1G65650 489 / 1e-175 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Potri.004G130400 [exp] 513 / 0 AT1G65650 483 / 7e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Potri.003G081000 [exp] 70 / 1e-13 AT4G17510 380 / 2e-135 ubiquitin C-terminal hydrolase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF01088 [flax] [poplar] Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1
Representative CDS sequence Show only first row Show all	>Lus10031062 pacid=23166804 polypeptide=Lus10031062 locus=Lus10031062.g ID=Lus10031062.BGIv1.0 annot-version=v1.0 ATGTCTTGGTGCACCATTGAGTCCGATCCTGGTGTCTTCACCGAGCTCATACAGCAAATGCAAGTTAAAGGAGTTCAGGTTGAAGAGTTGTATTCCTTGG ACCATGATTCTCTTGATAGTCTTAGGCCAATGTATGGCTTAATTTTCCTTTTCAAGTGGCGTCCTGGCGAGAAAGATGACCGTCTTGTAGTGAAGGATCC CAATTCTGACCTGTTCTTCGCAAGTCAGGTAATCAACAATGCCTGCGCAACCCAAGCGATTCTGTCCATCCTGATGAACTCTCCAGACATAGACATTGGC CCCGAGTTATCGAAGCTCAAAGAATTCACCAAGAACTTCCCGCCCGAGCTCAAAGGGTTGGCTATCAACAACAGTGAAGCCATACGTGCAGCCCACAACA GCTTTGCCAGACCAGAGCCATTCGTCTCTGATGAACAGAAAATTGCTGGGAAAGACGACGACGTCTACCATTTCATCAGTTACTTACCCGTCGATGGCAC CCTCTACGAACTTGACGGGCTGAAAGAAGGCCCCATCAGCCTAGGCCAGTGCTCCAACGATCTGGACTGGCTGCATCTGGTGCAGCCAGTAATCCAGGAG CGAATCGAGAGGTACTCCCAAAGTGAGATACGGTTCAATCTGTTGGCAGTAATCAAGAACAGGAAAGAAATGTACACCTCGGAGCTCAAGGAACTGCAGA GACAGAGGGAGCGAATATTGCAGCAGATTGCAGGTTCCCAGGCCGAAGGTGGCAGCTTCGAAGCCCTGAGCAAGTCGTTGTCAGAGGTGAACGGTGGGAT CGAGACAGCGACCGGGAAGATACTGATGGAGGAAGAGAAGTTCAAGAAGTGGAGAACTGAGAACATCCGGAGGAAGCATAACTACATACCGTTTCTGTTC AACTTCCTCAAGATCCTTGCCGAGAAGAAGCAACTGAAGCCACTTGTTGAGAAAGCTAAGCAAAAAGCTGGCAATGCTAAGTGA
AA sequence Show only first row Show all	>Lus10031062 pacid=23166804 polypeptide=Lus10031062 locus=Lus10031062.g ID=Lus10031062.BGIv1.0 annot-version=v1.0 MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDHDSLDSLRPMYGLIFLFKWRPGEKDDRLVVKDPNSDLFFASQVINNACATQAILSILMNSPDIDIG PELSKLKEFTKNFPPELKGLAINNSEAIRAAHNSFARPEPFVSDEQKIAGKDDDVYHFISYLPVDGTLYELDGLKEGPISLGQCSNDLDWLHLVQPVIQE RIERYSQSEIRFNLLAVIKNRKEMYTSELKELQRQRERILQQIAGSQAEGGSFEALSKSLSEVNGGIETATGKILMEEEKFKKWRTENIRRKHNYIPFLF NFLKILAEKKQLKPLVEKAKQKAGNAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	0	1
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10042240 [exp]	3.3	0.9076
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	4.7	0.9022
AT3G25680			unknown protein		Lus10035054 [exp]	5.3	0.8764
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	6.0	0.9003
AT3G46210			Ribosomal protein S5 domain 2-...		Lus10009221 [exp]	7.1	0.8829
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10019658 [exp]	9.5	0.8942
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	10.2	0.8807
AT4G12540			unknown protein		Lus10025820 [exp]	10.8	0.8975
AT1G80640			Protein kinase superfamily pro...		Lus10026091 [exp]	11.2	0.8891
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	13.1	0.8818

Compare expression of checked genes

Lus10031062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.