Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 659 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 649 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 590 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G17840 532 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 343 / 3e-108 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G01320 259 / 2e-76 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G55100 245 / 8e-72 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55090 224 / 1e-63 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 222 / 1e-62 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55130 221 / 1e-62 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035445 [exp] 1221 / 0 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 600 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 588 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 578 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 578 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 553 / 0 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 513 / 3e-174 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10023154 [exp] 418 / 3e-137 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10018268 [exp] 409 / 3e-136 AT1G17840 849 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G056700 [exp] 668 / 0 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 650 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051300 [exp] 646 / 0 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 638 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056600 [exp] 627 / 0 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 621 / 0 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 559 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 558 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 449 / 7e-149 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 448 / 2e-148 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10031063 pacid=23166703 polypeptide=Lus10031063 locus=Lus10031063.g ID=Lus10031063.BGIv1.0 annot-version=v1.0 ATGCTACCAGCTACCATGGAGTTAGAAGAAGGAATGATGACACAATCATTAGCAGCAGCAGGAAGTTGCCTTGCTTGGGAAGATCTAACTGTGACACTCA ACAACAGCTTCAGCAGTAGCAACAAGCACTTGCTGGATGGGCTCACTGGTTTCGCACAGTCCCATCGGATCATGGCTGTCATGGGTCCTTCTGGCTCTGG AAAATCGACCTTCCTCGACGCTTTAGCTGGGAGACTTTCCCTGAAAGCGGAGATGAAAGGGAAAGTTTTGATCACTGGGAAGAAGATCCAAAGCTCCCTC ATCAGCTCTAGAGACGTGGCTTACGTGACCCAGCAAGACGTATTCTTGGGAACACTGACAGTGAAGGAAACACTCTGCTTCGGGGCTCGCCTGAGGCTGC CGGAGCTAAATAAGGACGAGCTGGACGAGGTGATCGAGGACGCGATGGTGAAGATGGGTCTAGAGGAGTGCGCCAATACCACGATCGGGAACTGGCATTT GAGAGGAATAAGCGGAGGGGAGAGGAGGAGGCTGACCATTGGCGTCGAGATACTGGCACAGCCACATGTGCTGTGCTTGGATGAGCCAACGACTGGCCTC GACAGCGCCGCGTCTTTCTTCGTGGTTCAAGCTCTCCGCAACATTGCTCGTGATGGTAAGGTTGTGGTGTGTTCAATCCACCAGCCTACCAACGAAGTGT TTCGCCTGTTTGATGATCTCCTCATCATATCTGGTGGAGAAACTGTCTACTTTGGAGAAACCCACTTGGCTGTCAAGTTCTTTGCTGACTGCGGCTTCCC CTGCCCGATTAGAAGAAACCCACCGGATCATTTCCTCCGGTGCATCACTCCAGAGTTCGATCAAGTCTTCACCGCCCTGAAGCAGACACAAAGAATGAAC TATGCTGAACTCCCAGCGACAGATGGCTTGCTGAACTGGACAACTGCAGAGACCAGAGCAACACTAGTGAAGAAGTACAACTCATCCGGCTTTCCAGAGA TTGCAAGAAAAACGATTCGACAACTTCAACTACTCGATAATGATGATCATAATGGTCGGAGTAGCAGTAAGGTTATACCCATGAGGAGGAAGAGAAAGAT TGGGAAACAGAAAAGGTGGCGGAAGCAGTTCTGCACATTAACACACCGTTCCTTCCTGCACATGACCAGAGACCTTGGCTACTACTGGCTCCGAATCGCC TTCTACATTATGGTATCACTCAGCACCGGAACTTTGGAGTTCGACATTGGGACATCCAGTGCCTCCATCATAGCCCGAGCCAAGGTCGATGGTTTTCTCT ATGGCCTCATGATTTGCTTGTCCATTGGAGGCTTACCGTTCTTCCTCGACGAGATCAAGGCTTTCCATGGAGAAAGGCAAGGAGGGTACTATGGGGAGGC TGCTTATGTGCTGTCCAACTACATCTCCTCATTACCTTTCACTATAGTTATATCCTTTTCCTCGGGATCTATCTTGTACAGCATGGTGAAGTTCAATCCA GGATTCTCTCATCTGCTCTACTTCTGCGTCAACCTCTTCTTCTGCATCTCCGTTTCAGAGGCCTGCGTATTTGTAATCGCTTCTCTAATATCCAGTCCAT TGCCGTCCATGGGGGCTTCTGTCGCTGTTACTGTGCTCAACCTGATGCCTTCCATCGTATTTCGACCGATCCCGGACCTCCCAAAGATCATCTGGAGGTA CCCTTTGTCCTACATCAGTTATGCAGCTTGGGGAACACAGGGGAATATGAAGAACGACATGATCGGACTGGAATTCGACAACGCGATACCTGGACGAGCG AAGATCAAGGGCGAGACGATTCTGGAAAACACTTACGGTGTCAACCTACGCTACTCTAAGTGGCTGGATGTAATAGCTCTCCTCGGCTTGCTAATAGCTT ACAAGGTACTACTAGTCGTTTCTCTCCACTACAAACAGAGAGAATCGTCGCCGTTTAAACGGTTCTTCCACAGAAAGAGCAGCATCCAGAAAGCTTAG
AA sequence Show only first row Show all	>Lus10031063 pacid=23166703 polypeptide=Lus10031063 locus=Lus10031063.g ID=Lus10031063.BGIv1.0 annot-version=v1.0 MLPATMELEEGMMTQSLAAAGSCLAWEDLTVTLNNSFSSSNKHLLDGLTGFAQSHRIMAVMGPSGSGKSTFLDALAGRLSLKAEMKGKVLITGKKIQSSL ISSRDVAYVTQQDVFLGTLTVKETLCFGARLRLPELNKDELDEVIEDAMVKMGLEECANTTIGNWHLRGISGGERRRLTIGVEILAQPHVLCLDEPTTGL DSAASFFVVQALRNIARDGKVVVCSIHQPTNEVFRLFDDLLIISGGETVYFGETHLAVKFFADCGFPCPIRRNPPDHFLRCITPEFDQVFTALKQTQRMN YAELPATDGLLNWTTAETRATLVKKYNSSGFPEIARKTIRQLQLLDNDDHNGRSSSKVIPMRRKRKIGKQKRWRKQFCTLTHRSFLHMTRDLGYYWLRIA FYIMVSLSTGTLEFDIGTSSASIIARAKVDGFLYGLMICLSIGGLPFFLDEIKAFHGERQGGYYGEAAYVLSNYISSLPFTIVISFSSGSILYSMVKFNP GFSHLLYFCVNLFFCISVSEACVFVIASLISSPLPSMGASVAVTVLNLMPSIVFRPIPDLPKIIWRYPLSYISYAAWGTQGNMKNDMIGLEFDNAIPGRA KIKGETILENTYGVNLRYSKWLDVIALLGLLIAYKVLLVVSLHYKQRESSPFKRFFHRKSSIQKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	0	1
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	1.0	0.9721
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	1.4	0.9455
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	2.2	0.9363
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10035445 [exp]	3.2	0.9196
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	3.5	0.9451
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	3.7	0.9328
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	4.5	0.9388
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10024228 [exp]	4.7	0.9165
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	4.9	0.9341
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	8.9	0.9303

Compare expression of checked genes

Lus10031063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.