Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18210 351 / 2e-119 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G22950 334 / 1e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43660 265 / 3e-85 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G48740 263 / 1e-84 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G48700 248 / 4e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G47940 60 / 6e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035445 [exp] 489 / 2e-166 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000171 [exp] 213 / 2e-68 AT1G22950 171 / 3e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125800 [exp] 386 / 3e-133 AT3G18210 452 / 3e-159 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.015G043100 [exp] 372 / 2e-127 AT3G18210 554 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.012G051200 [exp] 351 / 1e-118 AT3G18210 531 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10031064 pacid=23166711 polypeptide=Lus10031064 locus=Lus10031064.g ID=Lus10031064.BGIv1.0 annot-version=v1.0 ATGGCTCTGCCCACCGAAAACGGGAAAGGTTCCCTCTTCCCAGCGGCGGTTCAGCTGACCAACAGGCTGAGACCTTGTCCTAAGTCCGACCACAAGTCGG ACGTCTACGACGACCTGCAATTGGAGTTCAGTCCTCTCCTCTTCAGCTCACTGGAGCGTTACCTGCCGCCAGACGTGCTCACAATGCCCCGCGATTCTAA AACCCAGTTCATGAGGGAGATCCTCGTGCGGTACTTCCCTTCCGAAGAGCGAATTCGTATACAAAAGCAAAGGCAATACAGACAGAAGATCAAGTCCGAG TATGAGCCTCTTTACAAGGAGATACGTTCCCTTGACGCAGCAAAATTTTTTGTCCCATCATTTCTCCGAGCTGTCGAACAGGGCACAGAAGAAAGTTTCA GAAGTATAATAAAGGAAACAACGTCTGGGATATATTCTTTTGATATGCTTCAGCCATCTTTCTGTGCGATGTTGATTTCTGAGGTAGAAAACATTGAGAG GTGGGTGCATGATACAAATTTCAAAATGATGCGCCCGAACACAATGAACCAATTTGGTGCCGTTCTTGACGACTTTGGCTTGGATCCAATGCTTGCTAAG TTGATGGATGGATTTATTCATCCAATGGCTAAAGTTCTCTTCCCTGAGATTAACAGATTACCTCTGGATTCTCACCATGGCTTCATTGTCGAATATGGAA CAGGCAAAGATGTTGAGCTAGGTTTCCATGTTGATGATTCAGAAGTAACCTTGAATGTTTGCTTGGGCAAAGATTTTCTTGGAGGGGAGTTGTACTTTCG CGGTGCTCGTTGCGAGAAACATGTGAATATTATGACCCATCCAGAGGAAATAGGGGATTACATCCACCGTGCAGGACGTGCAGTTCTTCATCGAGGACGC CATAGGCACGGGGCTAGAGCAACGACTTCCGGACATCGTTTAAACCTAATTCTATGGTGTAGAAGGGAGTTGAAGAAGTACAAAACAGACTTCTCGAGCT GGTGTGGCGAATGCCTCCGTCGAAAAAAGGAAAGACAGCGCATGACAATCGCATCAACCAAAATGGTAACCACAAGAGTTTTTCACACATTCGTCATATC TATATTCCCCGGTACCAACGTCAAAATATCCTTCTATCCTTGCAGGAACTGTTGA
AA sequence Show only first row Show all	>Lus10031064 pacid=23166711 polypeptide=Lus10031064 locus=Lus10031064.g ID=Lus10031064.BGIv1.0 annot-version=v1.0 MALPTENGKGSLFPAAVQLTNRLRPCPKSDHKSDVYDDLQLEFSPLLFSSLERYLPPDVLTMPRDSKTQFMREILVRYFPSEERIRIQKQRQYRQKIKSE YEPLYKEIRSLDAAKFFVPSFLRAVEQGTEESFRSIIKETTSGIYSFDMLQPSFCAMLISEVENIERWVHDTNFKMMRPNTMNQFGAVLDDFGLDPMLAK LMDGFIHPMAKVLFPEINRLPLDSHHGFIVEYGTGKDVELGFHVDDSEVTLNVCLGKDFLGGELYFRGARCEKHVNIMTHPEEIGDYIHRAGRAVLHRGR HRHGARATTSGHRLNLILWCRRELKKYKTDFSSWCGECLRRKKERQRMTIASTKMVTTRVFHTFVISIFPGTNVKISFYPCRNC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Lus10031064 [exp]	0	1
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10033402 [exp]	10.0	0.7896
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039305 [exp]	34.8	0.7788
AT5G26749			C2H2 and C2HC zinc fingers sup...		Lus10001520 [exp]	86.7	0.7553
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10035713 [exp]	138.0	0.7118
AT5G03450			Transducin/WD40 repeat-like su...		Lus10013821 [exp]	192.2	0.7268

Compare expression of checked genes

Lus10031064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.