Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23540 811 / 0 ARM repeat superfamily protein (.1) AT2G34357 250 / 6e-68 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035446 [exp] 2003 / 0 AT4G23540 835 / 0.0 ARM repeat superfamily protein (.1) Lus10021944 [exp] 285 / 2e-79 AT2G34357 1194 / 0.0 ARM repeat superfamily protein (.1) Lus10041231 [exp] 120 / 1e-27 AT2G34357 683 / 0.0 ARM repeat superfamily protein (.1) Lus10041232 [exp] 90 / 1e-19 AT2G34357 293 / 1e-91 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G050000 [exp] 1089 / 0 AT4G23540 927 / 0.0 ARM repeat superfamily protein (.1) Potri.006G137900 [exp] 299 / 4e-84 AT2G34357 1301 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08161 [flax] [poplar] NUC173 NUC173 domain
Representative CDS sequence Show only first row Show all	>Lus10031065 pacid=23166838 polypeptide=Lus10031065 locus=Lus10031065.g ID=Lus10031065.BGIv1.0 annot-version=v1.0 ATGGCGACGCCGGCACCGGAGAAACCAATCAGGCACAAGCGAAGACTCAGCACAATGAAGCCGAATGCCAAACGCCAGCGAACAGAGGCAAAGGCAAAAG CTGACCCGGAGCTTGAACCCGACAACGCATTCCAAGACGACACTGATCTCTGCCAGCAGCTAATGTCCCGCTACTCAACCTCCACAGCTCCACAGCATCA GCACCTCATAGCCACCGCCGCCGCATTCCGGTCCATACTCTCCTCGGAATCCCGTCCTTTAACTCCCACGGCTTACTTCCTGGCAGCGATGGACAATCTG TCGGATTCTGAAGCTCTAGATTCCACTGCCGTTACGGCGCTCTCTTCTTTCGTTTCAATTGTGACGCCTTTGATTCCGGAGAAAGGATTTCCGAGCGACA AGGCAACGGAGTCCGTTTCTGTGCTGGTGGGAGCGGTTTTTGGGAGGGATGGACTGGGAGTGTCCACTTTGAGTGGCGTGGTGAAGTGTTTGGGTGTCTT GATTGCTAAGTTTTGTGATTTGGAGGATTGGAATTCGGTTGGTCCTGGTTTTCAGAGTTTGCTTCAGTTGTCAGTTGACAAACGTCCTAAGTTACGAAGG ACTGCTCAAGACTGTCTAGTGGATGCTCTCAAATCGTTCAATTCTTCTGCTGTTGTTATCAAGGAGGCAAGCAAGTTGGTACTGTCTTTGCTCAATAGTC ATACTCCAAGTAATAAAGAAACTGCGGATCAATCTAAGGCCGGATCTTCTTCAGCTTGTAAACACGTGGAGCTTCTTCATGTATTGAATCTGTTGAAGAT TACTGTTCCACATCTCTCCGACAAGATCAGTTCTAAAATATTAGCAGAGGTAGTCAAGCTTATGGCTTCTCATTTCTTGCCTCAGACAAGACACGTTTTC CAAATTATTGAAGTGTTTCTCACGTCTTCACGGGATGACGTTATTGGTCCTTATGTCGAAGGCATCACCGACACTCTTGCTTCTTATGTATTGCTGGGAG AGAAAAATCCTGTGGACACAATACTTTCTGCCGCTATGCTGTTCAAAGTTGCTCTAAATAAGCTTCAGGCCAGAGGTTCATGCTCATGGATGAAAACCTT TCCGAAAATTTTGGGTTGTTTGGAAGGTCTTCAATCTTCCGAAGCTGACACAGCATCTCAAGCTACAGATATCATTAAAGAGTTGATACACCAGGGTCTC GATGTTAAAGTTCTCGAGACCAACATTAGAAGACAAGCATTTGAAGTAGAAGGAAGCCAGGAGGCAGATATGATGAAAGAATCCTGCCTTGTGTTTGAAA ATGCTCTAAGTTCATGTGATGGGGTGCCAAAGGGGCAGATTTTGTCAGTGATATCAGTTTTGTTCGGAAAGCTCGGAGAATTCTCTTTTATCTTCATGAA GGCTGTTGTGCCCAAGCTTGCTGAATTAATGAACCATGCTAATTTTGATTCACCAGAAGCAATTTATCTTCAGAGCTGTATTGGTTCAGCAGTTGTTGCC CTGGGTCCAGAAAAGATACTTGGGCTTATACCTATCTCCTTTAGTGCTAGCAGTTTGACTTGTTCAAACACCTGGTTGGTACCCATTCTAAATGATCACA TTGTTGGTGCATCACTAGCGTATTATGTGGACAATATTGTGCCTCTTGCAAAGTCTCTTCAGCGAGCCAGCCAGAAAGTGAAAAAATCAGTACTTCGTCA AGAGCTGAAGGCTCTTGCTCAGGGACTCTTGGAGCTACTCCCTGCCTTCTGTAACCATCCTGTTGATACTCACAGAAAGTTTGAATCTTTGACGGCAATT TTAATTTCTTTCCTCAAGAAGGATCCAAGCATGCACAAAAGTATAGCTGTTTCCTTGAAAACTCTTGTGAGTCAAAATAGAAGTGCACTTGGCGCAGGAT GCAATGTGGCAGAACTGACTAGCAACGAAATGAAAGATTTGGATTCAGAGTCCAAAAGCATGACCCCTTATTCAATCAAAATTGCAAACAGAAATATCAA GGCCTTGGCATCGCATTCCTCTGATCTGCTTCAGACTCTTATTGATACGTTAATTGCTTCATCTCCAGAGAAACGATTGCATTTGAAGGAGGCTATAGGA TGCTTAGCTTCTATTACCAAATCATCCATAACCAAAAAGCTATTTTCATTGTGGCTTGAGAAGCTTAGGCTTGTCAACACTGCTGGTGAGTTCGAGAAGC CAGCAAGTCAGAGTGAACAGGCTGCTGAAGAGCAAAACAGCTCAACTGAGTTGGAGAACGTAGAAAGGCGTGTAATAATGGAGCTTGCATCTTGTCTTGT TGAGGGAGCCAATGAGGATCTTATTCAGCTGACGTATAACTTCATCACTTACTTATTGGAGGAAACTAAAATGCCTGGACACTGTGAAGCCTATTGCACT TTGAGTAAAATTTTAGAGCATCACACTTGGTTTTGTTCTTCACGCTCTGCAGAGCTGATTGGCATATTAATTAGCTTGAAGCCGCCTGTAGATATTGCAA CACTCAAGTATAGATTTAGTTGCTTCCACTTCCTTCTCGTTCATACCTTAGAGAAGCCAGAACAGGAAGATGGACAAGAGGAGGATAATGCGAGGACATT TCTTATGCTAAATGAAATCATACTGACTTTGAAGGATGGGAAAGATGAAGCAAGGGGAGTCGCTTCTGATATGCTTGTTACACTAAGTTCTGTTTTGAAG AAGTCATCTCAAGACAGATCTGACAAACAGTACCACAAGCTGATAAGCATGATACTGGGCTACCTATCTGGATCATCGGCGCACATAAAGAGTGGAGCTG TATCTGCACTGTCAGTTCTTGTGTACAATGACTCGGATATTTGTTTGGATGTTCCTGACCTCGTGCCTGACGTCTTGTCTTTGCTGCAAAATAAAGATCT TGAAGTAGCTAAAGCTGCGTTGGGGTTTGTGAAAGTAATGGTATCTTGCTTGGTATCCAAGGACCTTCTGAACCTTCAAGCCGACATCTTGAACGAAATT CTTCCTTGGTCGTCTGTTTCAAGAAATCACTTGAGATCTAAGGTGACAGTCATTCTGGAGATTTTGTTGCGGAAGTGTGGCTCTGCGGCAGTTCAATCAG TCACACCGGATAAGTATAGGAACTTTGTCAAGACTGTCCTGCAGAATCGTCATGAGCGGTCAGATTCCAAGGATACGGGCGCTAAGGATGACAATACAAA GATGAACGACTCATCCTCCGAGAAGGTGATGACAGATGAGGAAGGAGGAGGGCATAGAAGAGGTCCACCAATCGGAAAGAGGAAATGGGAGAACAATAAC CCACCAAATGAAAAGAGGGGTGGACAAAGAGATAATAAGAGGCCGAGGCAGCAGCATCATTCGTCGAAACTTGCATTCGGAAGGAAGAAAGGGAATTTCG GGCAGGATCAACGTGCTCGAAAACATGGCGGTGGTGGTCGGACTGGCAGGAGGTAA
AA sequence Show only first row Show all	>Lus10031065 pacid=23166838 polypeptide=Lus10031065 locus=Lus10031065.g ID=Lus10031065.BGIv1.0 annot-version=v1.0 MATPAPEKPIRHKRRLSTMKPNAKRQRTEAKAKADPELEPDNAFQDDTDLCQQLMSRYSTSTAPQHQHLIATAAAFRSILSSESRPLTPTAYFLAAMDNL SDSEALDSTAVTALSSFVSIVTPLIPEKGFPSDKATESVSVLVGAVFGRDGLGVSTLSGVVKCLGVLIAKFCDLEDWNSVGPGFQSLLQLSVDKRPKLRR TAQDCLVDALKSFNSSAVVIKEASKLVLSLLNSHTPSNKETADQSKAGSSSACKHVELLHVLNLLKITVPHLSDKISSKILAEVVKLMASHFLPQTRHVF QIIEVFLTSSRDDVIGPYVEGITDTLASYVLLGEKNPVDTILSAAMLFKVALNKLQARGSCSWMKTFPKILGCLEGLQSSEADTASQATDIIKELIHQGL DVKVLETNIRRQAFEVEGSQEADMMKESCLVFENALSSCDGVPKGQILSVISVLFGKLGEFSFIFMKAVVPKLAELMNHANFDSPEAIYLQSCIGSAVVA LGPEKILGLIPISFSASSLTCSNTWLVPILNDHIVGASLAYYVDNIVPLAKSLQRASQKVKKSVLRQELKALAQGLLELLPAFCNHPVDTHRKFESLTAI LISFLKKDPSMHKSIAVSLKTLVSQNRSALGAGCNVAELTSNEMKDLDSESKSMTPYSIKIANRNIKALASHSSDLLQTLIDTLIASSPEKRLHLKEAIG CLASITKSSITKKLFSLWLEKLRLVNTAGEFEKPASQSEQAAEEQNSSTELENVERRVIMELASCLVEGANEDLIQLTYNFITYLLEETKMPGHCEAYCT LSKILEHHTWFCSSRSAELIGILISLKPPVDIATLKYRFSCFHFLLVHTLEKPEQEDGQEEDNARTFLMLNEIILTLKDGKDEARGVASDMLVTLSSVLK KSSQDRSDKQYHKLISMILGYLSGSSAHIKSGAVSALSVLVYNDSDICLDVPDLVPDVLSLLQNKDLEVAKAALGFVKVMVSCLVSKDLLNLQADILNEI LPWSSVSRNHLRSKVTVILEILLRKCGSAAVQSVTPDKYRNFVKTVLQNRHERSDSKDTGAKDDNTKMNDSSSEKVMTDEEGGGHRRGPPIGKRKWENNN PPNEKRGGQRDNKRPRQQHHSSKLAFGRKKGNFGQDQRARKHGGGGRTGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23540			ARM repeat superfamily protein...		Lus10031065 [exp]	0	1
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	2.2	0.9240
AT4G01860			Transducin family protein / WD...		Lus10009986 [exp]	2.4	0.9205
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	4.9	0.8957
AT3G21540			transducin family protein / WD...		Lus10023903 [exp]	5.3	0.8815
AT1G63110			GPI transamidase subunit PIG-U...		Lus10006320 [exp]	7.1	0.8478
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	8.9	0.8826
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	9.2	0.8942
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	11.0	0.8483
AT1G72090			Methylthiotransferase (.1)		Lus10008261 [exp]	13.0	0.8138
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10000040 [exp]	14.7	0.8431

Compare expression of checked genes

Lus10031065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.